miRNA display CGI


Results 41 - 60 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29617 3' -57 NC_006151.1 + 33905 0.67 0.791684
Target:  5'- gGCCUC-GCG-CCuCCGCGUCCgGCggGCg -3'
miRNA:   3'- -CGGAGaCGUaGGcGGCGUAGG-UGa-CG- -5'
29617 3' -57 NC_006151.1 + 39565 0.67 0.782524
Target:  5'- cGCCcgcCUGCAcCCcgggGCCGag-CCGCUGCg -3'
miRNA:   3'- -CGGa--GACGUaGG----CGGCguaGGUGACG- -5'
29617 3' -57 NC_006151.1 + 57249 0.67 0.782524
Target:  5'- gGCCUCgGCGUCCGC-GCGgcccUCgACgGCc -3'
miRNA:   3'- -CGGAGaCGUAGGCGgCGU----AGgUGaCG- -5'
29617 3' -57 NC_006151.1 + 54083 0.67 0.782524
Target:  5'- cCCUCUGCggCgGCgGCGgcggccaugUCgGCUGCg -3'
miRNA:   3'- cGGAGACGuaGgCGgCGU---------AGgUGACG- -5'
29617 3' -57 NC_006151.1 + 77278 0.68 0.773229
Target:  5'- cGCCUCgcucaccCAUuuGCCGCG-CCGCgUGUg -3'
miRNA:   3'- -CGGAGac-----GUAggCGGCGUaGGUG-ACG- -5'
29617 3' -57 NC_006151.1 + 106067 0.68 0.773229
Target:  5'- cGCUUCgUGCGccaCCGCCGCG-CCgACUGg -3'
miRNA:   3'- -CGGAG-ACGUa--GGCGGCGUaGG-UGACg -5'
29617 3' -57 NC_006151.1 + 85173 0.68 0.773229
Target:  5'- cGCCgcggGCG-CCGCCGCc-CCGCUGg -3'
miRNA:   3'- -CGGaga-CGUaGGCGGCGuaGGUGACg -5'
29617 3' -57 NC_006151.1 + 92198 0.68 0.773229
Target:  5'- cGCCgacGCG-CCGCCGCggCCGC-GCu -3'
miRNA:   3'- -CGGagaCGUaGGCGGCGuaGGUGaCG- -5'
29617 3' -57 NC_006151.1 + 58732 0.68 0.773229
Target:  5'- uGCCgCUcGCGUCgcgcagCGCCGCggCCACcGCg -3'
miRNA:   3'- -CGGaGA-CGUAG------GCGGCGuaGGUGaCG- -5'
29617 3' -57 NC_006151.1 + 102905 0.68 0.771354
Target:  5'- cGCCUCgucgacucgcugGCggCCGCCGaggagCgGCUGCg -3'
miRNA:   3'- -CGGAGa-----------CGuaGGCGGCgua--GgUGACG- -5'
29617 3' -57 NC_006151.1 + 137298 0.68 0.767591
Target:  5'- gGCCaugCgcgGguUCCGCCGCGcggugcucgacgcgcUCgCGCUGCu -3'
miRNA:   3'- -CGGa--Ga--CguAGGCGGCGU---------------AG-GUGACG- -5'
29617 3' -57 NC_006151.1 + 91370 0.68 0.763807
Target:  5'- aCCUUgagcGCGUCgaGCaCGCcgCCGCUGCc -3'
miRNA:   3'- cGGAGa---CGUAGg-CG-GCGuaGGUGACG- -5'
29617 3' -57 NC_006151.1 + 85531 0.68 0.763807
Target:  5'- gGCCUgCUGCugCUGCgGCGcCUGCUGCa -3'
miRNA:   3'- -CGGA-GACGuaGGCGgCGUaGGUGACG- -5'
29617 3' -57 NC_006151.1 + 47719 0.68 0.763807
Target:  5'- cCCgggaaCUGCAUCCGCaGUaaAUUUACUGCa -3'
miRNA:   3'- cGGa----GACGUAGGCGgCG--UAGGUGACG- -5'
29617 3' -57 NC_006151.1 + 84590 0.68 0.758098
Target:  5'- cGCCUCgcgcugGCGcacgcgaacgcgcgCCGCCGCGcggCCGCcGCg -3'
miRNA:   3'- -CGGAGa-----CGUa-------------GGCGGCGUa--GGUGaCG- -5'
29617 3' -57 NC_006151.1 + 87436 0.68 0.754269
Target:  5'- gGCCg-UGC--CCGCCGCcgCCGCgGCc -3'
miRNA:   3'- -CGGagACGuaGGCGGCGuaGGUGaCG- -5'
29617 3' -57 NC_006151.1 + 90882 0.68 0.754269
Target:  5'- -gCUCgGCGUucCCGgcCCGCAgCCGCUGCa -3'
miRNA:   3'- cgGAGaCGUA--GGC--GGCGUaGGUGACG- -5'
29617 3' -57 NC_006151.1 + 82309 0.68 0.748494
Target:  5'- cGCCUCcGCGUCCGCgaggacggccaccucCGCGggCCACa-- -3'
miRNA:   3'- -CGGAGaCGUAGGCG---------------GCGUa-GGUGacg -5'
29617 3' -57 NC_006151.1 + 37008 0.68 0.744624
Target:  5'- cGCCcCccggGCccCCGCCGCcgCCGCgcgGCg -3'
miRNA:   3'- -CGGaGa---CGuaGGCGGCGuaGGUGa--CG- -5'
29617 3' -57 NC_006151.1 + 112227 0.68 0.744624
Target:  5'- cGCgCUCgcucGUcgCCGCCGCcAggCGCUGCg -3'
miRNA:   3'- -CG-GAGa---CGuaGGCGGCG-UagGUGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.