miRNA display CGI


Results 21 - 40 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29617 3' -57 NC_006151.1 + 57361 0.66 0.83516
Target:  5'- cCCUC-GCG-CCGCCGCAgCCAguagGCg -3'
miRNA:   3'- cGGAGaCGUaGGCGGCGUaGGUga--CG- -5'
29617 3' -57 NC_006151.1 + 127311 0.66 0.83516
Target:  5'- gGCCgu--CGUCCGCgCGgGUCCGCggGCg -3'
miRNA:   3'- -CGGagacGUAGGCG-GCgUAGGUGa-CG- -5'
29617 3' -57 NC_006151.1 + 131551 0.66 0.83516
Target:  5'- cGCCUCggGCG-CCGCacgggcccCGCGUCgcucauggugguCGCUGCg -3'
miRNA:   3'- -CGGAGa-CGUaGGCG--------GCGUAG------------GUGACG- -5'
29617 3' -57 NC_006151.1 + 19024 0.66 0.833503
Target:  5'- cGCCggcgaggugaagCUGCA--CGCCGgGUCCACcggGCg -3'
miRNA:   3'- -CGGa-----------GACGUagGCGGCgUAGGUGa--CG- -5'
29617 3' -57 NC_006151.1 + 65756 0.67 0.826803
Target:  5'- gGCCUCgucccCGUCC-CCGUcgCCGCcgGCg -3'
miRNA:   3'- -CGGAGac---GUAGGcGGCGuaGGUGa-CG- -5'
29617 3' -57 NC_006151.1 + 48510 0.67 0.825957
Target:  5'- gGCCg-UGCAcaaggacUCC-CUGCcgCCGCUGCg -3'
miRNA:   3'- -CGGagACGU-------AGGcGGCGuaGGUGACG- -5'
29617 3' -57 NC_006151.1 + 120325 0.67 0.818269
Target:  5'- aGCCUCU-CGgacgCCGCgCGCGcCCGCgugGCc -3'
miRNA:   3'- -CGGAGAcGUa---GGCG-GCGUaGGUGa--CG- -5'
29617 3' -57 NC_006151.1 + 83640 0.67 0.818269
Target:  5'- gGCCUggugCUGCG-CCgugacgaggGCCGCGUCCuccucgcucagGCUGCc -3'
miRNA:   3'- -CGGA----GACGUaGG---------CGGCGUAGG-----------UGACG- -5'
29617 3' -57 NC_006151.1 + 111379 0.67 0.818269
Target:  5'- cCCUC-GCcgUCGUCGCcgCCGCcgGCa -3'
miRNA:   3'- cGGAGaCGuaGGCGGCGuaGGUGa-CG- -5'
29617 3' -57 NC_006151.1 + 119542 0.67 0.815675
Target:  5'- cGCCUgcgcgcacacaaccCUGCA-CCGCCuGCG-CCACcGCu -3'
miRNA:   3'- -CGGA--------------GACGUaGGCGG-CGUaGGUGaCG- -5'
29617 3' -57 NC_006151.1 + 84013 0.67 0.809565
Target:  5'- aCCUCgGgGUgCGCCGCccCgACUGCg -3'
miRNA:   3'- cGGAGaCgUAgGCGGCGuaGgUGACG- -5'
29617 3' -57 NC_006151.1 + 69096 0.67 0.809565
Target:  5'- -gCUCgGCGUgCCGCCGCAccagcucCCGCcGCg -3'
miRNA:   3'- cgGAGaCGUA-GGCGGCGUa------GGUGaCG- -5'
29617 3' -57 NC_006151.1 + 110169 0.67 0.809565
Target:  5'- gGCC-CUGCucaUCGCCGCGUgCCGcCUGa -3'
miRNA:   3'- -CGGaGACGua-GGCGGCGUA-GGU-GACg -5'
29617 3' -57 NC_006151.1 + 74047 0.67 0.808686
Target:  5'- cGUCUcCUGCAggaUCagcauggCGuCCGCGUCCACgGCg -3'
miRNA:   3'- -CGGA-GACGU---AG-------GC-GGCGUAGGUGaCG- -5'
29617 3' -57 NC_006151.1 + 55621 0.67 0.800701
Target:  5'- cGCCUCUcGCGgcUCUgggagcaggaGCUG-AUCCGCUGCu -3'
miRNA:   3'- -CGGAGA-CGU--AGG----------CGGCgUAGGUGACG- -5'
29617 3' -57 NC_006151.1 + 123249 0.67 0.800701
Target:  5'- cGCgUUCUGCGaggCCGCCGCG-CgCGCggGCa -3'
miRNA:   3'- -CG-GAGACGUa--GGCGGCGUaG-GUGa-CG- -5'
29617 3' -57 NC_006151.1 + 21561 0.67 0.800701
Target:  5'- gGCCUCgGCGagcCCGCCGagggCCGC-GCg -3'
miRNA:   3'- -CGGAGaCGUa--GGCGGCgua-GGUGaCG- -5'
29617 3' -57 NC_006151.1 + 16888 0.67 0.800701
Target:  5'- cGCgCUC-GCGUCCguuGCCGCGcCCGCcccgGCg -3'
miRNA:   3'- -CG-GAGaCGUAGG---CGGCGUaGGUGa---CG- -5'
29617 3' -57 NC_006151.1 + 4664 0.67 0.800701
Target:  5'- gGCC--UGCAUCCGCgGguUCUGCaGCc -3'
miRNA:   3'- -CGGagACGUAGGCGgCguAGGUGaCG- -5'
29617 3' -57 NC_006151.1 + 86186 0.67 0.791684
Target:  5'- cGCCgcgCUGCccCCGgCGgGcCCGCUGCc -3'
miRNA:   3'- -CGGa--GACGuaGGCgGCgUaGGUGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.