miRNA display CGI


Results 21 - 40 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29617 3' -57 NC_006151.1 + 37008 0.68 0.744624
Target:  5'- cGCCcCccggGCccCCGCCGCcgCCGCgcgGCg -3'
miRNA:   3'- -CGGaGa---CGuaGGCGGCGuaGGUGa--CG- -5'
29617 3' -57 NC_006151.1 + 37172 0.69 0.674861
Target:  5'- cGCCg--GCGcCCGCCGCGgccCCGCgGCc -3'
miRNA:   3'- -CGGagaCGUaGGCGGCGUa--GGUGaCG- -5'
29617 3' -57 NC_006151.1 + 37380 0.69 0.674861
Target:  5'- cCCUCcgGCcgaCgGCCGCGUCCGCUacgGCg -3'
miRNA:   3'- cGGAGa-CGua-GgCGGCGUAGGUGA---CG- -5'
29617 3' -57 NC_006151.1 + 37907 0.71 0.603358
Target:  5'- cCCUCUGCGcccgcgucCCGCCGCcuucgCCGCcGCg -3'
miRNA:   3'- cGGAGACGUa-------GGCGGCGua---GGUGaCG- -5'
29617 3' -57 NC_006151.1 + 38821 0.71 0.562794
Target:  5'- cGCC-CgacgGCGgcuUCCGCCGCGUCCcgGCcgGCg -3'
miRNA:   3'- -CGGaGa---CGU---AGGCGGCGUAGG--UGa-CG- -5'
29617 3' -57 NC_006151.1 + 39565 0.67 0.782524
Target:  5'- cGCCcgcCUGCAcCCcgggGCCGag-CCGCUGCg -3'
miRNA:   3'- -CGGa--GACGUaGG----CGGCguaGGUGACG- -5'
29617 3' -57 NC_006151.1 + 39838 0.66 0.859096
Target:  5'- cGUCUcCUGCggCCGCCGgGgccucgccgagcUCCGCgGCc -3'
miRNA:   3'- -CGGA-GACGuaGGCGGCgU------------AGGUGaCG- -5'
29617 3' -57 NC_006151.1 + 40400 0.72 0.532853
Target:  5'- uCCUCUGCGUCCGCgGCGgcggCCucgGUc -3'
miRNA:   3'- cGGAGACGUAGGCGgCGUa---GGugaCG- -5'
29617 3' -57 NC_006151.1 + 42837 0.66 0.851314
Target:  5'- -aCgggGUGggagCCGCCGUcgCCGCUGCa -3'
miRNA:   3'- cgGagaCGUa---GGCGGCGuaGGUGACG- -5'
29617 3' -57 NC_006151.1 + 45791 0.69 0.685004
Target:  5'- cCCUC-GCcaCCGCCGCAgcgccugUCACUGCc -3'
miRNA:   3'- cGGAGaCGuaGGCGGCGUa------GGUGACG- -5'
29617 3' -57 NC_006151.1 + 46824 0.7 0.664684
Target:  5'- uGCCUCUGCccccgagaCCGCCGCcccCCGggGCg -3'
miRNA:   3'- -CGGAGACGua------GGCGGCGua-GGUgaCG- -5'
29617 3' -57 NC_006151.1 + 46972 0.73 0.484329
Target:  5'- uGCUgCUGCggCCGCCGCcgCUcCUGCc -3'
miRNA:   3'- -CGGaGACGuaGGCGGCGuaGGuGACG- -5'
29617 3' -57 NC_006151.1 + 47719 0.68 0.763807
Target:  5'- cCCgggaaCUGCAUCCGCaGUaaAUUUACUGCa -3'
miRNA:   3'- cGGa----GACGUAGGCGgCG--UAGGUGACG- -5'
29617 3' -57 NC_006151.1 + 48510 0.67 0.825957
Target:  5'- gGCCg-UGCAcaaggacUCC-CUGCcgCCGCUGCg -3'
miRNA:   3'- -CGGagACGU-------AGGcGGCGuaGGUGACG- -5'
29617 3' -57 NC_006151.1 + 48625 0.77 0.30173
Target:  5'- cGCUUCUGCcUCuaaCGCCGCcaccgCCGCUGCa -3'
miRNA:   3'- -CGGAGACGuAG---GCGGCGua---GGUGACG- -5'
29617 3' -57 NC_006151.1 + 49167 0.66 0.859096
Target:  5'- gGCCUggGCG--CGCCGCGgggugCUGCUGCu -3'
miRNA:   3'- -CGGAgaCGUagGCGGCGUa----GGUGACG- -5'
29617 3' -57 NC_006151.1 + 50348 0.68 0.744624
Target:  5'- gGCCgcgGCcucCCGCCGCGucUCCGCcgGCg -3'
miRNA:   3'- -CGGagaCGua-GGCGGCGU--AGGUGa-CG- -5'
29617 3' -57 NC_006151.1 + 50708 0.71 0.561788
Target:  5'- cGCCUCgGCGaCgGCCGCcccggcgGUCCAgCUGCc -3'
miRNA:   3'- -CGGAGaCGUaGgCGGCG-------UAGGU-GACG- -5'
29617 3' -57 NC_006151.1 + 52761 0.73 0.474874
Target:  5'- cGCCUCgcagcGCAgcgCCGCgGCGUCCuggucgcggcuCUGCg -3'
miRNA:   3'- -CGGAGa----CGUa--GGCGgCGUAGGu----------GACG- -5'
29617 3' -57 NC_006151.1 + 54083 0.67 0.782524
Target:  5'- cCCUCUGCggCgGCgGCGgcggccaugUCgGCUGCg -3'
miRNA:   3'- cGGAGACGuaGgCGgCGU---------AGgUGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.