miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29617 3' -57 NC_006151.1 + 696 0.7 0.653459
Target:  5'- cGCCgagcCUGCcccuUCCGUCGCAccgggggUCCGCggGCg -3'
miRNA:   3'- -CGGa---GACGu---AGGCGGCGU-------AGGUGa-CG- -5'
29617 3' -57 NC_006151.1 + 1690 0.7 0.623796
Target:  5'- cCCUCcGCcgCgGCCGCcgCCGCcGCu -3'
miRNA:   3'- cGGAGaCGuaGgCGGCGuaGGUGaCG- -5'
29617 3' -57 NC_006151.1 + 1732 0.74 0.438022
Target:  5'- aCCUCcGCcgCCGCCGCAgCCACcuccgGCc -3'
miRNA:   3'- cGGAGaCGuaGGCGGCGUaGGUGa----CG- -5'
29617 3' -57 NC_006151.1 + 3214 0.73 0.447083
Target:  5'- uCCUCggggucgGCuAUCUGCCGCAUCCAg-GCg -3'
miRNA:   3'- cGGAGa------CG-UAGGCGGCGUAGGUgaCG- -5'
29617 3' -57 NC_006151.1 + 3978 0.71 0.593168
Target:  5'- gGCCUCgGCGagCCgGCCGCggCCACguugGCc -3'
miRNA:   3'- -CGGAGaCGUa-GG-CGGCGuaGGUGa---CG- -5'
29617 3' -57 NC_006151.1 + 4664 0.67 0.800701
Target:  5'- gGCC--UGCAUCCGCgGguUCUGCaGCc -3'
miRNA:   3'- -CGGagACGUAGGCGgCguAGGUGaCG- -5'
29617 3' -57 NC_006151.1 + 5695 0.66 0.859096
Target:  5'- uGCCggcgCUGCGgccaCCGCUGCuggCugUGCu -3'
miRNA:   3'- -CGGa---GACGUa---GGCGGCGuagGugACG- -5'
29617 3' -57 NC_006151.1 + 5893 0.69 0.674861
Target:  5'- gGCCUCUGC---CGCUGCGagUGCUGCc -3'
miRNA:   3'- -CGGAGACGuagGCGGCGUagGUGACG- -5'
29617 3' -57 NC_006151.1 + 6127 0.71 0.593168
Target:  5'- gGCCUCgugGC-UCCgGCCGCggCCGCgaggacgGCg -3'
miRNA:   3'- -CGGAGa--CGuAGG-CGGCGuaGGUGa------CG- -5'
29617 3' -57 NC_006151.1 + 10182 0.71 0.602338
Target:  5'- cUCUCUGCGUUCGCCggucgcggcgcggGCggCgGCUGCa -3'
miRNA:   3'- cGGAGACGUAGGCGG-------------CGuaGgUGACG- -5'
29617 3' -57 NC_006151.1 + 11385 0.69 0.704146
Target:  5'- cGCCUCUuccccccuccuccGCcgCCGCCGCcaGUCCucCUcGCu -3'
miRNA:   3'- -CGGAGA-------------CGuaGGCGGCG--UAGGu-GA-CG- -5'
29617 3' -57 NC_006151.1 + 16888 0.67 0.800701
Target:  5'- cGCgCUC-GCGUCCguuGCCGCGcCCGCcccgGCg -3'
miRNA:   3'- -CG-GAGaCGUAGG---CGGCGUaGGUGa---CG- -5'
29617 3' -57 NC_006151.1 + 17953 0.66 0.866673
Target:  5'- cGUCUCcgGCGcCCGCCugccgGCGUcCCACgcgGCg -3'
miRNA:   3'- -CGGAGa-CGUaGGCGG-----CGUA-GGUGa--CG- -5'
29617 3' -57 NC_006151.1 + 19024 0.66 0.833503
Target:  5'- cGCCggcgaggugaagCUGCA--CGCCGgGUCCACcggGCg -3'
miRNA:   3'- -CGGa-----------GACGUagGCGGCgUAGGUGa--CG- -5'
29617 3' -57 NC_006151.1 + 21561 0.67 0.800701
Target:  5'- gGCCUCgGCGagcCCGCCGagggCCGC-GCg -3'
miRNA:   3'- -CGGAGaCGUa--GGCGGCgua-GGUGaCG- -5'
29617 3' -57 NC_006151.1 + 32053 0.83 0.120429
Target:  5'- cGCCUCUGCAgCCGCCGCccgcgCCGCgaccgGCg -3'
miRNA:   3'- -CGGAGACGUaGGCGGCGua---GGUGa----CG- -5'
29617 3' -57 NC_006151.1 + 32243 0.7 0.654481
Target:  5'- gGCCgcgGCGaCCGCCGCcgCCGCUc- -3'
miRNA:   3'- -CGGagaCGUaGGCGGCGuaGGUGAcg -5'
29617 3' -57 NC_006151.1 + 33905 0.67 0.791684
Target:  5'- gGCCUC-GCG-CCuCCGCGUCCgGCggGCg -3'
miRNA:   3'- -CGGAGaCGUaGGcGGCGUAGG-UGa-CG- -5'
29617 3' -57 NC_006151.1 + 35681 0.66 0.83516
Target:  5'- uUCUCUGCcaacccgaggggAUCCGaCCGUcUCCGCUccgGCg -3'
miRNA:   3'- cGGAGACG------------UAGGC-GGCGuAGGUGA---CG- -5'
29617 3' -57 NC_006151.1 + 36916 0.71 0.593168
Target:  5'- cGCCggagagGCGcccUCCGCCGCggCCGCgGCu -3'
miRNA:   3'- -CGGaga---CGU---AGGCGGCGuaGGUGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.