miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29617 3' -57 NC_006151.1 + 32053 0.83 0.120429
Target:  5'- cGCCUCUGCAgCCGCCGCccgcgCCGCgaccgGCg -3'
miRNA:   3'- -CGGAGACGUaGGCGGCGua---GGUGa----CG- -5'
29617 3' -57 NC_006151.1 + 88722 0.82 0.130197
Target:  5'- gGUCUCgGCGUCCGCCGCggCCAC-GCg -3'
miRNA:   3'- -CGGAGaCGUAGGCGGCGuaGGUGaCG- -5'
29617 3' -57 NC_006151.1 + 48625 0.77 0.30173
Target:  5'- cGCUUCUGCcUCuaaCGCCGCcaccgCCGCUGCa -3'
miRNA:   3'- -CGGAGACGuAG---GCGGCGua---GGUGACG- -5'
29617 3' -57 NC_006151.1 + 110971 0.75 0.385968
Target:  5'- uCCUCcacgaucgcgUGCGccUCgGCCGCAUCCAuCUGCa -3'
miRNA:   3'- cGGAG----------ACGU--AGgCGGCGUAGGU-GACG- -5'
29617 3' -57 NC_006151.1 + 59430 0.74 0.402864
Target:  5'- cGCCagcUCgGCGUCgGCCGCcgCCGCcGCg -3'
miRNA:   3'- -CGG---AGaCGUAGgCGGCGuaGGUGaCG- -5'
29617 3' -57 NC_006151.1 + 1732 0.74 0.438022
Target:  5'- aCCUCcGCcgCCGCCGCAgCCACcuccgGCc -3'
miRNA:   3'- cGGAGaCGuaGGCGGCGUaGGUGa----CG- -5'
29617 3' -57 NC_006151.1 + 77167 0.74 0.438022
Target:  5'- aUCUUcGCGUCCGCCGCcgcGUCCACguccGCc -3'
miRNA:   3'- cGGAGaCGUAGGCGGCG---UAGGUGa---CG- -5'
29617 3' -57 NC_006151.1 + 3214 0.73 0.447083
Target:  5'- uCCUCggggucgGCuAUCUGCCGCAUCCAg-GCg -3'
miRNA:   3'- cGGAGa------CG-UAGGCGGCGUAGGUgaCG- -5'
29617 3' -57 NC_006151.1 + 88375 0.73 0.447083
Target:  5'- aGgCUCggcgcgagcGCGUCCGCgGCGUCCGCgGCc -3'
miRNA:   3'- -CgGAGa--------CGUAGGCGgCGUAGGUGaCG- -5'
29617 3' -57 NC_006151.1 + 108086 0.73 0.456248
Target:  5'- cCCUCcacCAUCCGCCGCGaCCGCgGCc -3'
miRNA:   3'- cGGAGac-GUAGGCGGCGUaGGUGaCG- -5'
29617 3' -57 NC_006151.1 + 87180 0.73 0.465512
Target:  5'- cGCCcgCgGCG-CCGCCGCAgCUGCUGCc -3'
miRNA:   3'- -CGGa-GaCGUaGGCGGCGUaGGUGACG- -5'
29617 3' -57 NC_006151.1 + 52761 0.73 0.474874
Target:  5'- cGCCUCgcagcGCAgcgCCGCgGCGUCCuggucgcggcuCUGCg -3'
miRNA:   3'- -CGGAGa----CGUa--GGCGgCGUAGGu----------GACG- -5'
29617 3' -57 NC_006151.1 + 46972 0.73 0.484329
Target:  5'- uGCUgCUGCggCCGCCGCcgCUcCUGCc -3'
miRNA:   3'- -CGGaGACGuaGGCGGCGuaGGuGACG- -5'
29617 3' -57 NC_006151.1 + 61437 0.72 0.493873
Target:  5'- cGCCgcgGCGcCCGcCCGCGUCCGCcGCc -3'
miRNA:   3'- -CGGagaCGUaGGC-GGCGUAGGUGaCG- -5'
29617 3' -57 NC_006151.1 + 131925 0.72 0.493873
Target:  5'- gGCCUCcGCGgugCUGCCGUAgcuggCCACggGCg -3'
miRNA:   3'- -CGGAGaCGUa--GGCGGCGUa----GGUGa-CG- -5'
29617 3' -57 NC_006151.1 + 135182 0.72 0.503501
Target:  5'- cGCCggCUGCcgCCGCCgggccagucccaGCGUCCGCUcCa -3'
miRNA:   3'- -CGGa-GACGuaGGCGG------------CGUAGGUGAcG- -5'
29617 3' -57 NC_006151.1 + 40400 0.72 0.532853
Target:  5'- uCCUCUGCGUCCGCgGCGgcggCCucgGUc -3'
miRNA:   3'- cGGAGACGUAGGCGgCGUa---GGugaCG- -5'
29617 3' -57 NC_006151.1 + 92259 0.71 0.552757
Target:  5'- cGCCUCUGCGUCaaCCuCAUCCGCcacauggGCu -3'
miRNA:   3'- -CGGAGACGUAGgcGGcGUAGGUGa------CG- -5'
29617 3' -57 NC_006151.1 + 50708 0.71 0.561788
Target:  5'- cGCCUCgGCGaCgGCCGCcccggcgGUCCAgCUGCc -3'
miRNA:   3'- -CGGAGaCGUaGgCGGCG-------UAGGU-GACG- -5'
29617 3' -57 NC_006151.1 + 38821 0.71 0.562794
Target:  5'- cGCC-CgacgGCGgcuUCCGCCGCGUCCcgGCcgGCg -3'
miRNA:   3'- -CGGaGa---CGU---AGGCGGCGUAGG--UGa-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.