miRNA display CGI


Results 21 - 40 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29617 3' -57 NC_006151.1 + 137420 0.71 0.583005
Target:  5'- cCCUC-GCcgCCGCCGCGggguccgccUCCGCgGCc -3'
miRNA:   3'- cGGAGaCGuaGGCGGCGU---------AGGUGaCG- -5'
29617 3' -57 NC_006151.1 + 67189 0.71 0.583005
Target:  5'- cCCUCgcgcugGCcaccuUCCGCgGCAUCCGCgucgGCu -3'
miRNA:   3'- cGGAGa-----CGu----AGGCGgCGUAGGUGa---CG- -5'
29617 3' -57 NC_006151.1 + 101831 0.71 0.593168
Target:  5'- cGUCUCgGCggCCGCCGCccCCGCcccgGCa -3'
miRNA:   3'- -CGGAGaCGuaGGCGGCGuaGGUGa---CG- -5'
29617 3' -57 NC_006151.1 + 36916 0.71 0.593168
Target:  5'- cGCCggagagGCGcccUCCGCCGCggCCGCgGCu -3'
miRNA:   3'- -CGGaga---CGU---AGGCGGCGuaGGUGaCG- -5'
29617 3' -57 NC_006151.1 + 6127 0.71 0.593168
Target:  5'- gGCCUCgugGC-UCCgGCCGCggCCGCgaggacgGCg -3'
miRNA:   3'- -CGGAGa--CGuAGG-CGGCGuaGGUGa------CG- -5'
29617 3' -57 NC_006151.1 + 3978 0.71 0.593168
Target:  5'- gGCCUCgGCGagCCgGCCGCggCCACguugGCc -3'
miRNA:   3'- -CGGAGaCGUa-GG-CGGCGuaGGUGa---CG- -5'
29617 3' -57 NC_006151.1 + 10182 0.71 0.602338
Target:  5'- cUCUCUGCGUUCGCCggucgcggcgcggGCggCgGCUGCa -3'
miRNA:   3'- cGGAGACGUAGGCGG-------------CGuaGgUGACG- -5'
29617 3' -57 NC_006151.1 + 37907 0.71 0.603358
Target:  5'- cCCUCUGCGcccgcgucCCGCCGCcuucgCCGCcGCg -3'
miRNA:   3'- cGGAGACGUa-------GGCGGCGua---GGUGaCG- -5'
29617 3' -57 NC_006151.1 + 57303 0.71 0.603358
Target:  5'- gGCCUUgGCGgcgCgGCCGaagCCGCUGCg -3'
miRNA:   3'- -CGGAGaCGUa--GgCGGCguaGGUGACG- -5'
29617 3' -57 NC_006151.1 + 112592 0.7 0.61357
Target:  5'- gGCUUCgUGgAggCCGCCGCGgcgCCGCUGg -3'
miRNA:   3'- -CGGAG-ACgUa-GGCGGCGUa--GGUGACg -5'
29617 3' -57 NC_006151.1 + 100261 0.7 0.61357
Target:  5'- cGCCUCUuCAcCUGCCGCuucgucuUCCGCggGCg -3'
miRNA:   3'- -CGGAGAcGUaGGCGGCGu------AGGUGa-CG- -5'
29617 3' -57 NC_006151.1 + 1690 0.7 0.623796
Target:  5'- cCCUCcGCcgCgGCCGCcgCCGCcGCu -3'
miRNA:   3'- cGGAGaCGuaGgCGGCGuaGGUGaCG- -5'
29617 3' -57 NC_006151.1 + 81332 0.7 0.634029
Target:  5'- cGCCccCU-CGUCCGUCGCcgCCGCcGCg -3'
miRNA:   3'- -CGGa-GAcGUAGGCGGCGuaGGUGaCG- -5'
29617 3' -57 NC_006151.1 + 66021 0.7 0.634029
Target:  5'- cGCCUCcGCAaagUCCGCCcGCGUgaaCCGCcggUGCc -3'
miRNA:   3'- -CGGAGaCGU---AGGCGG-CGUA---GGUG---ACG- -5'
29617 3' -57 NC_006151.1 + 69510 0.7 0.634029
Target:  5'- cGCCUCcuCcgCCGCCGCG-CCGC-GCg -3'
miRNA:   3'- -CGGAGacGuaGGCGGCGUaGGUGaCG- -5'
29617 3' -57 NC_006151.1 + 57609 0.7 0.64426
Target:  5'- gGCCUCgGCcgCgGCCGCcUCgACgGCg -3'
miRNA:   3'- -CGGAGaCGuaGgCGGCGuAGgUGaCG- -5'
29617 3' -57 NC_006151.1 + 135857 0.7 0.64426
Target:  5'- uGCCUCaccggGCAcgUgGCCaGCGUCCGCgUGCg -3'
miRNA:   3'- -CGGAGa----CGUa-GgCGG-CGUAGGUG-ACG- -5'
29617 3' -57 NC_006151.1 + 138302 0.7 0.64426
Target:  5'- -gCUCUGCggGUCCGCgCGCuUCaGCUGCc -3'
miRNA:   3'- cgGAGACG--UAGGCG-GCGuAGgUGACG- -5'
29617 3' -57 NC_006151.1 + 696 0.7 0.653459
Target:  5'- cGCCgagcCUGCcccuUCCGUCGCAccgggggUCCGCggGCg -3'
miRNA:   3'- -CGGa---GACGu---AGGCGGCGU-------AGGUGa-CG- -5'
29617 3' -57 NC_006151.1 + 109151 0.7 0.654481
Target:  5'- cGUCUCcacaucCcgCCGCCGCAgCCugUGCa -3'
miRNA:   3'- -CGGAGac----GuaGGCGGCGUaGGugACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.