miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29617 3' -57 NC_006151.1 + 139295 0.69 0.695102
Target:  5'- cCCUCgGCGUCUGCgGCGcgUGCUGCu -3'
miRNA:   3'- cGGAGaCGUAGGCGgCGUagGUGACG- -5'
29617 3' -57 NC_006151.1 + 138302 0.7 0.64426
Target:  5'- -gCUCUGCggGUCCGCgCGCuUCaGCUGCc -3'
miRNA:   3'- cgGAGACG--UAGGCG-GCGuAGgUGACG- -5'
29617 3' -57 NC_006151.1 + 137420 0.71 0.583005
Target:  5'- cCCUC-GCcgCCGCCGCGggguccgccUCCGCgGCc -3'
miRNA:   3'- cGGAGaCGuaGGCGGCGU---------AGGUGaCG- -5'
29617 3' -57 NC_006151.1 + 137298 0.68 0.767591
Target:  5'- gGCCaugCgcgGguUCCGCCGCGcggugcucgacgcgcUCgCGCUGCu -3'
miRNA:   3'- -CGGa--Ga--CguAGGCGGCGU---------------AG-GUGACG- -5'
29617 3' -57 NC_006151.1 + 136966 0.66 0.866673
Target:  5'- cGCCUgCUGgAgcuggCCGCCGCG-CCggGCgGCg -3'
miRNA:   3'- -CGGA-GACgUa----GGCGGCGUaGG--UGaCG- -5'
29617 3' -57 NC_006151.1 + 136080 0.66 0.843333
Target:  5'- cGCCggaGCGcCCGCUGCGcUCCAUcGCg -3'
miRNA:   3'- -CGGagaCGUaGGCGGCGU-AGGUGaCG- -5'
29617 3' -57 NC_006151.1 + 135857 0.7 0.64426
Target:  5'- uGCCUCaccggGCAcgUgGCCaGCGUCCGCgUGCg -3'
miRNA:   3'- -CGGAGa----CGUa-GgCGG-CGUAGGUG-ACG- -5'
29617 3' -57 NC_006151.1 + 135363 0.69 0.705148
Target:  5'- cGCCgc-GCGUUgGCCGCGUgCGCcGCg -3'
miRNA:   3'- -CGGagaCGUAGgCGGCGUAgGUGaCG- -5'
29617 3' -57 NC_006151.1 + 135182 0.72 0.503501
Target:  5'- cGCCggCUGCcgCCGCCgggccagucccaGCGUCCGCUcCa -3'
miRNA:   3'- -CGGa-GACGuaGGCGG------------CGUAGGUGAcG- -5'
29617 3' -57 NC_006151.1 + 131925 0.72 0.493873
Target:  5'- gGCCUCcGCGgugCUGCCGUAgcuggCCACggGCg -3'
miRNA:   3'- -CGGAGaCGUa--GGCGGCGUa----GGUGa-CG- -5'
29617 3' -57 NC_006151.1 + 131551 0.66 0.83516
Target:  5'- cGCCUCggGCG-CCGCacgggcccCGCGUCgcucauggugguCGCUGCg -3'
miRNA:   3'- -CGGAGa-CGUaGGCG--------GCGUAG------------GUGACG- -5'
29617 3' -57 NC_006151.1 + 127311 0.66 0.83516
Target:  5'- gGCCgu--CGUCCGCgCGgGUCCGCggGCg -3'
miRNA:   3'- -CGGagacGUAGGCG-GCgUAGGUGa-CG- -5'
29617 3' -57 NC_006151.1 + 123249 0.67 0.800701
Target:  5'- cGCgUUCUGCGaggCCGCCGCG-CgCGCggGCa -3'
miRNA:   3'- -CG-GAGACGUa--GGCGGCGUaG-GUGa-CG- -5'
29617 3' -57 NC_006151.1 + 120325 0.67 0.818269
Target:  5'- aGCCUCU-CGgacgCCGCgCGCGcCCGCgugGCc -3'
miRNA:   3'- -CGGAGAcGUa---GGCG-GCGUaGGUGa--CG- -5'
29617 3' -57 NC_006151.1 + 120101 0.66 0.851314
Target:  5'- aGCCggugCUGCG-CCGCCGCGUggUgGacaUGCu -3'
miRNA:   3'- -CGGa---GACGUaGGCGGCGUA--GgUg--ACG- -5'
29617 3' -57 NC_006151.1 + 119542 0.67 0.815675
Target:  5'- cGCCUgcgcgcacacaaccCUGCA-CCGCCuGCG-CCACcGCu -3'
miRNA:   3'- -CGGA--------------GACGUaGGCGG-CGUaGGUGaCG- -5'
29617 3' -57 NC_006151.1 + 118718 0.66 0.859096
Target:  5'- -gCUCUGCcgCCuGCUGCAcggCUACgUGCu -3'
miRNA:   3'- cgGAGACGuaGG-CGGCGUa--GGUG-ACG- -5'
29617 3' -57 NC_006151.1 + 114109 0.69 0.685004
Target:  5'- gGCCUCgGCggCUGCUGCc-CCACgUGCg -3'
miRNA:   3'- -CGGAGaCGuaGGCGGCGuaGGUG-ACG- -5'
29617 3' -57 NC_006151.1 + 112592 0.7 0.61357
Target:  5'- gGCUUCgUGgAggCCGCCGCGgcgCCGCUGg -3'
miRNA:   3'- -CGGAG-ACgUa-GGCGGCGUa--GGUGACg -5'
29617 3' -57 NC_006151.1 + 112432 0.7 0.664684
Target:  5'- cGCCgcgCcGCcgCCGCCGCGcgCCAUggGCu -3'
miRNA:   3'- -CGGa--GaCGuaGGCGGCGUa-GGUGa-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.