miRNA display CGI


Results 41 - 60 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29617 5' -54.6 NC_006151.1 + 122967 0.68 0.884582
Target:  5'- -cGCGGaCGccggCGACGGGGGCGUcGGc -3'
miRNA:   3'- uuUGUC-GCaua-GCUGCUCCCGCAcCC- -5'
29617 5' -54.6 NC_006151.1 + 128219 0.68 0.884582
Target:  5'- ---aGGCGUG-CGACGAGcuCGUGGGc -3'
miRNA:   3'- uuugUCGCAUaGCUGCUCccGCACCC- -5'
29617 5' -54.6 NC_006151.1 + 71776 0.68 0.884582
Target:  5'- cGGCAGCGg--CGGCGGGGGCu---- -3'
miRNA:   3'- uUUGUCGCauaGCUGCUCCCGcaccc -5'
29617 5' -54.6 NC_006151.1 + 14479 0.68 0.877462
Target:  5'- gGGugGGCGgGUgGGCGGGGGuCGggaGGGa -3'
miRNA:   3'- -UUugUCGCaUAgCUGCUCCC-GCa--CCC- -5'
29617 5' -54.6 NC_006151.1 + 23868 0.68 0.877462
Target:  5'- --cCGGUGgcGUUGGCGGGGGCGagcGGGu -3'
miRNA:   3'- uuuGUCGCa-UAGCUGCUCCCGCa--CCC- -5'
29617 5' -54.6 NC_006151.1 + 95918 0.68 0.877462
Target:  5'- -cGC-GCGUgcaGUCGccCGAGGGCGUGcGGu -3'
miRNA:   3'- uuUGuCGCA---UAGCu-GCUCCCGCAC-CC- -5'
29617 5' -54.6 NC_006151.1 + 122450 0.68 0.877462
Target:  5'- gAGGCGGCGUccacggCGGCGGcGGGCGccgaggccgGGGa -3'
miRNA:   3'- -UUUGUCGCAua----GCUGCU-CCCGCa--------CCC- -5'
29617 5' -54.6 NC_006151.1 + 18094 0.68 0.873083
Target:  5'- cGGCGGCcggGUUagagacgcucgucggGACGGGGGCGcUGGGg -3'
miRNA:   3'- uUUGUCGca-UAG---------------CUGCUCCCGC-ACCC- -5'
29617 5' -54.6 NC_006151.1 + 88196 0.68 0.862558
Target:  5'- cGGCGGCGUGgucggaccaGGCGAGGcGCGccuccgGGGg -3'
miRNA:   3'- uUUGUCGCAUag-------CUGCUCC-CGCa-----CCC- -5'
29617 5' -54.6 NC_006151.1 + 104667 0.68 0.854784
Target:  5'- -cGCGGCGcgcgcgcUCGACGAGGGgGUGc- -3'
miRNA:   3'- uuUGUCGCau-----AGCUGCUCCCgCACcc -5'
29617 5' -54.6 NC_006151.1 + 96637 0.69 0.850021
Target:  5'- -cGCAGCGccucgagcucggCGGCGAGGGCccGGGc -3'
miRNA:   3'- uuUGUCGCaua---------GCUGCUCCCGcaCCC- -5'
29617 5' -54.6 NC_006151.1 + 5109 0.69 0.846805
Target:  5'- gAGACGGUGgcggccCGGCGcGGGCGagUGGGg -3'
miRNA:   3'- -UUUGUCGCaua---GCUGCuCCCGC--ACCC- -5'
29617 5' -54.6 NC_006151.1 + 11764 0.69 0.838626
Target:  5'- gAGugAGCGUGcgCGAaggggggaGAGGGCGcgUGGGc -3'
miRNA:   3'- -UUugUCGCAUa-GCUg-------CUCCCGC--ACCC- -5'
29617 5' -54.6 NC_006151.1 + 129410 0.69 0.838626
Target:  5'- -cGCGGCGUAuUCGGCGAGGucgacguccgGCcccaaGUGGGc -3'
miRNA:   3'- uuUGUCGCAU-AGCUGCUCC----------CG-----CACCC- -5'
29617 5' -54.6 NC_006151.1 + 131871 0.69 0.825146
Target:  5'- cGGCGGCGUcggGUCGcagggcagcacggcCGAGGGCGacgGGGg -3'
miRNA:   3'- uUUGUCGCA---UAGCu-------------GCUCCCGCa--CCC- -5'
29617 5' -54.6 NC_006151.1 + 28764 0.69 0.821702
Target:  5'- uGGCAGCGUgccaggacccgaGUCGGCG-GGGCGguccggcccgcGGGa -3'
miRNA:   3'- uUUGUCGCA------------UAGCUGCuCCCGCa----------CCC- -5'
29617 5' -54.6 NC_006151.1 + 67769 0.69 0.804075
Target:  5'- -uGCGGCGUcgCGuuGAGGGCGUc-- -3'
miRNA:   3'- uuUGUCGCAuaGCugCUCCCGCAccc -5'
29617 5' -54.6 NC_006151.1 + 21417 0.69 0.804075
Target:  5'- -uGCGGCGUcUCGGgccuCGGGggucgcGGCGUGGGg -3'
miRNA:   3'- uuUGUCGCAuAGCU----GCUC------CCGCACCC- -5'
29617 5' -54.6 NC_006151.1 + 45092 0.7 0.795018
Target:  5'- -cGCGGUGUggcGUCGAUGGGGucgugcCGUGGGa -3'
miRNA:   3'- uuUGUCGCA---UAGCUGCUCCc-----GCACCC- -5'
29617 5' -54.6 NC_006151.1 + 66784 0.7 0.785811
Target:  5'- gGGACGGCGgcggCGGCGgcGGGGCccGGGg -3'
miRNA:   3'- -UUUGUCGCaua-GCUGC--UCCCGcaCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.