Results 21 - 40 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29617 | 5' | -54.6 | NC_006151.1 | + | 33329 | 0.67 | 0.916681 |
Target: 5'- gGGACAGgG----GGCGGGGGCG-GGGa -3' miRNA: 3'- -UUUGUCgCauagCUGCUCCCGCaCCC- -5' |
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29617 | 5' | -54.6 | NC_006151.1 | + | 80072 | 0.67 | 0.916681 |
Target: 5'- aGGGCGGUGgga-GA-GAGGGCgGUGGGa -3' miRNA: 3'- -UUUGUCGCauagCUgCUCCCG-CACCC- -5' |
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29617 | 5' | -54.6 | NC_006151.1 | + | 80102 | 0.67 | 0.916681 |
Target: 5'- aGGGCGGUGgga-GA-GAGGGCgGUGGGa -3' miRNA: 3'- -UUUGUCGCauagCUgCUCCCG-CACCC- -5' |
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29617 | 5' | -54.6 | NC_006151.1 | + | 80132 | 0.67 | 0.916681 |
Target: 5'- aGGGCGGUGgga-GA-GAGGGCgGUGGGa -3' miRNA: 3'- -UUUGUCGCauagCUgCUCCCG-CACCC- -5' |
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29617 | 5' | -54.6 | NC_006151.1 | + | 80162 | 0.67 | 0.916681 |
Target: 5'- aGGGCGGUGgga-GA-GAGGGCgGUGGGa -3' miRNA: 3'- -UUUGUCGCauagCUgCUCCCG-CACCC- -5' |
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29617 | 5' | -54.6 | NC_006151.1 | + | 80192 | 0.67 | 0.916681 |
Target: 5'- aGGGCGGUGgga-GA-GAGGGCgGUGGGa -3' miRNA: 3'- -UUUGUCGCauagCUgCUCCCG-CACCC- -5' |
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29617 | 5' | -54.6 | NC_006151.1 | + | 80222 | 0.67 | 0.916681 |
Target: 5'- aGGGCGGUGgga-GA-GAGGGCgGUGGGa -3' miRNA: 3'- -UUUGUCGCauagCUgCUCCCG-CACCC- -5' |
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29617 | 5' | -54.6 | NC_006151.1 | + | 90739 | 0.67 | 0.916681 |
Target: 5'- uGGCGGCGg--CGcccuCGGGGGCGgcGGGc -3' miRNA: 3'- uUUGUCGCauaGCu---GCUCCCGCa-CCC- -5' |
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29617 | 5' | -54.6 | NC_006151.1 | + | 8073 | 0.67 | 0.910739 |
Target: 5'- aAGAUGGCGacggggCGugGcGGGGCGUGGc -3' miRNA: 3'- -UUUGUCGCaua---GCugC-UCCCGCACCc -5' |
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29617 | 5' | -54.6 | NC_006151.1 | + | 19364 | 0.67 | 0.904555 |
Target: 5'- -uGCAGCGUGUagaGGCccgugucguuGGGCGUGGc -3' miRNA: 3'- uuUGUCGCAUAg--CUGcu--------CCCGCACCc -5' |
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29617 | 5' | -54.6 | NC_006151.1 | + | 15624 | 0.67 | 0.904555 |
Target: 5'- aGGACGGgGacgacuUUGACGGGGccaGCGUGGGc -3' miRNA: 3'- -UUUGUCgCau----AGCUGCUCC---CGCACCC- -5' |
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29617 | 5' | -54.6 | NC_006151.1 | + | 89842 | 0.67 | 0.904555 |
Target: 5'- --cCGGCGUA--GGCGuGGGUGUGcGGg -3' miRNA: 3'- uuuGUCGCAUagCUGCuCCCGCAC-CC- -5' |
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29617 | 5' | -54.6 | NC_006151.1 | + | 118980 | 0.67 | 0.904555 |
Target: 5'- --cCGGCGUGUaCGACGAGGagccccccGCGcUGGa -3' miRNA: 3'- uuuGUCGCAUA-GCUGCUCC--------CGC-ACCc -5' |
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29617 | 5' | -54.6 | NC_006151.1 | + | 128342 | 0.67 | 0.904555 |
Target: 5'- --cCAGCGUcagGUUGAUGAGGgucugcGCGUGGu -3' miRNA: 3'- uuuGUCGCA---UAGCUGCUCC------CGCACCc -5' |
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29617 | 5' | -54.6 | NC_006151.1 | + | 56972 | 0.67 | 0.903924 |
Target: 5'- -cGCGGuUGUAcaugcCGACGAGGGCGgcgaagaUGGGc -3' miRNA: 3'- uuUGUC-GCAUa----GCUGCUCCCGC-------ACCC- -5' |
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29617 | 5' | -54.6 | NC_006151.1 | + | 81268 | 0.67 | 0.903924 |
Target: 5'- cGAGCAGCGccUCGGCGGggaucucGGGCGcGGc -3' miRNA: 3'- -UUUGUCGCauAGCUGCU-------CCCGCaCCc -5' |
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29617 | 5' | -54.6 | NC_006151.1 | + | 57910 | 0.67 | 0.898132 |
Target: 5'- -cGCAGCuca-CGGgccCGAGGGCGUGGa -3' miRNA: 3'- uuUGUCGcauaGCU---GCUCCCGCACCc -5' |
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29617 | 5' | -54.6 | NC_006151.1 | + | 126265 | 0.67 | 0.891473 |
Target: 5'- aGGACGGCG--UCGACGAaGGcGaCGUGGa -3' miRNA: 3'- -UUUGUCGCauAGCUGCU-CC-C-GCACCc -5' |
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29617 | 5' | -54.6 | NC_006151.1 | + | 44843 | 0.67 | 0.891473 |
Target: 5'- gGGGCgAGCGggGUCGugGAGGG-G-GGGc -3' miRNA: 3'- -UUUG-UCGCa-UAGCugCUCCCgCaCCC- -5' |
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29617 | 5' | -54.6 | NC_006151.1 | + | 103673 | 0.67 | 0.890795 |
Target: 5'- aAGGCGGCGcgcgCGGCGGGGGUgcugcgcgccgccGUGGa -3' miRNA: 3'- -UUUGUCGCaua-GCUGCUCCCG-------------CACCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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