miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29617 5' -54.6 NC_006151.1 + 56972 0.67 0.903924
Target:  5'- -cGCGGuUGUAcaugcCGACGAGGGCGgcgaagaUGGGc -3'
miRNA:   3'- uuUGUC-GCAUa----GCUGCUCCCGC-------ACCC- -5'
29617 5' -54.6 NC_006151.1 + 81268 0.67 0.903924
Target:  5'- cGAGCAGCGccUCGGCGGggaucucGGGCGcGGc -3'
miRNA:   3'- -UUUGUCGCauAGCUGCU-------CCCGCaCCc -5'
29617 5' -54.6 NC_006151.1 + 57910 0.67 0.898132
Target:  5'- -cGCAGCuca-CGGgccCGAGGGCGUGGa -3'
miRNA:   3'- uuUGUCGcauaGCU---GCUCCCGCACCc -5'
29617 5' -54.6 NC_006151.1 + 126265 0.67 0.891473
Target:  5'- aGGACGGCG--UCGACGAaGGcGaCGUGGa -3'
miRNA:   3'- -UUUGUCGCauAGCUGCU-CC-C-GCACCc -5'
29617 5' -54.6 NC_006151.1 + 44843 0.67 0.891473
Target:  5'- gGGGCgAGCGggGUCGugGAGGG-G-GGGc -3'
miRNA:   3'- -UUUG-UCGCa-UAGCugCUCCCgCaCCC- -5'
29617 5' -54.6 NC_006151.1 + 103673 0.67 0.890795
Target:  5'- aAGGCGGCGcgcgCGGCGGGGGUgcugcgcgccgccGUGGa -3'
miRNA:   3'- -UUUGUCGCaua-GCUGCUCCCG-------------CACCc -5'
29617 5' -54.6 NC_006151.1 + 11806 0.67 0.916681
Target:  5'- gGGGCGGgGUGggGugGGGGGCGgcgGcGGc -3'
miRNA:   3'- -UUUGUCgCAUagCugCUCCCGCa--C-CC- -5'
29617 5' -54.6 NC_006151.1 + 33329 0.67 0.916681
Target:  5'- gGGACAGgG----GGCGGGGGCG-GGGa -3'
miRNA:   3'- -UUUGUCgCauagCUGCUCCCGCaCCC- -5'
29617 5' -54.6 NC_006151.1 + 90371 0.67 0.922381
Target:  5'- cGAGCAGCaucGUCGACGccgcGGGCG-GGa -3'
miRNA:   3'- -UUUGUCGca-UAGCUGCu---CCCGCaCCc -5'
29617 5' -54.6 NC_006151.1 + 4174 0.67 0.922381
Target:  5'- cGAGCAGCGcGgccgucaccuccUCGAggcaggcgggccCGAGGGCGgccGGGg -3'
miRNA:   3'- -UUUGUCGCaU------------AGCU------------GCUCCCGCa--CCC- -5'
29617 5' -54.6 NC_006151.1 + 91731 0.67 0.922381
Target:  5'- cGAACAGCGacAUCG-CGGcGGGCGagcGGGc -3'
miRNA:   3'- -UUUGUCGCa-UAGCuGCU-CCCGCa--CCC- -5'
29617 5' -54.6 NC_006151.1 + 50624 0.67 0.922381
Target:  5'- cGGCAGCGUGcacgccUCGGCGAcGGcCGcGGGc -3'
miRNA:   3'- uUUGUCGCAU------AGCUGCUcCC-GCaCCC- -5'
29617 5' -54.6 NC_006151.1 + 57144 0.67 0.922381
Target:  5'- ----uGCGcacgCGGCGGGGGCGaGGGc -3'
miRNA:   3'- uuuguCGCaua-GCUGCUCCCGCaCCC- -5'
29617 5' -54.6 NC_006151.1 + 90739 0.67 0.916681
Target:  5'- uGGCGGCGg--CGcccuCGGGGGCGgcGGGc -3'
miRNA:   3'- uUUGUCGCauaGCu---GCUCCCGCa-CCC- -5'
29617 5' -54.6 NC_006151.1 + 80222 0.67 0.916681
Target:  5'- aGGGCGGUGgga-GA-GAGGGCgGUGGGa -3'
miRNA:   3'- -UUUGUCGCauagCUgCUCCCG-CACCC- -5'
29617 5' -54.6 NC_006151.1 + 80192 0.67 0.916681
Target:  5'- aGGGCGGUGgga-GA-GAGGGCgGUGGGa -3'
miRNA:   3'- -UUUGUCGCauagCUgCUCCCG-CACCC- -5'
29617 5' -54.6 NC_006151.1 + 80162 0.67 0.916681
Target:  5'- aGGGCGGUGgga-GA-GAGGGCgGUGGGa -3'
miRNA:   3'- -UUUGUCGCauagCUgCUCCCG-CACCC- -5'
29617 5' -54.6 NC_006151.1 + 80132 0.67 0.916681
Target:  5'- aGGGCGGUGgga-GA-GAGGGCgGUGGGa -3'
miRNA:   3'- -UUUGUCGCauagCUgCUCCCG-CACCC- -5'
29617 5' -54.6 NC_006151.1 + 80102 0.67 0.916681
Target:  5'- aGGGCGGUGgga-GA-GAGGGCgGUGGGa -3'
miRNA:   3'- -UUUGUCGCauagCUgCUCCCG-CACCC- -5'
29617 5' -54.6 NC_006151.1 + 80072 0.67 0.916681
Target:  5'- aGGGCGGUGgga-GA-GAGGGCgGUGGGa -3'
miRNA:   3'- -UUUGUCGCauagCUgCUCCCG-CACCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.