miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29617 5' -54.6 NC_006151.1 + 25109 0.66 0.947225
Target:  5'- -uGCuGCGUG-CGAgCGcuGGGCGUGGa -3'
miRNA:   3'- uuUGuCGCAUaGCU-GCu-CCCGCACCc -5'
29617 5' -54.6 NC_006151.1 + 26289 0.72 0.667013
Target:  5'- cGGACGGUGgg--GugGGGGGgGUGGGg -3'
miRNA:   3'- -UUUGUCGCauagCugCUCCCgCACCC- -5'
29617 5' -54.6 NC_006151.1 + 27288 0.66 0.938015
Target:  5'- --gUAGCGcccgCGcuugGGGGGCGUGGGg -3'
miRNA:   3'- uuuGUCGCaua-GCug--CUCCCGCACCC- -5'
29617 5' -54.6 NC_006151.1 + 27372 0.66 0.932537
Target:  5'- ---gGGCGgGUCGACGGGcgagaacGGCG-GGGa -3'
miRNA:   3'- uuugUCGCaUAGCUGCUC-------CCGCaCCC- -5'
29617 5' -54.6 NC_006151.1 + 27502 0.83 0.184169
Target:  5'- gGAACGGgGUGggagggggugCGAUGGGGGCGUGGGg -3'
miRNA:   3'- -UUUGUCgCAUa---------GCUGCUCCCGCACCC- -5'
29617 5' -54.6 NC_006151.1 + 28764 0.69 0.821702
Target:  5'- uGGCAGCGUgccaggacccgaGUCGGCG-GGGCGguccggcccgcGGGa -3'
miRNA:   3'- uUUGUCGCA------------UAGCUGCuCCCGCa----------CCC- -5'
29617 5' -54.6 NC_006151.1 + 29601 0.72 0.687533
Target:  5'- cGGCcGCGg--CGGCGGGGGCugguGUGGGa -3'
miRNA:   3'- uUUGuCGCauaGCUGCUCCCG----CACCC- -5'
29617 5' -54.6 NC_006151.1 + 33329 0.67 0.916681
Target:  5'- gGGACAGgG----GGCGGGGGCG-GGGa -3'
miRNA:   3'- -UUUGUCgCauagCUGCUCCCGCaCCC- -5'
29617 5' -54.6 NC_006151.1 + 34396 0.66 0.94274
Target:  5'- aGAGgGGUGggggaGAgGAGGGgGUGGGu -3'
miRNA:   3'- -UUUgUCGCauag-CUgCUCCCgCACCC- -5'
29617 5' -54.6 NC_006151.1 + 41182 0.72 0.687533
Target:  5'- -uGCGGUG-GUCGAgGGGGGUGgggGGGg -3'
miRNA:   3'- uuUGUCGCaUAGCUgCUCCCGCa--CCC- -5'
29617 5' -54.6 NC_006151.1 + 44843 0.67 0.891473
Target:  5'- gGGGCgAGCGggGUCGugGAGGG-G-GGGc -3'
miRNA:   3'- -UUUG-UCGCa-UAGCugCUCCCgCaCCC- -5'
29617 5' -54.6 NC_006151.1 + 45035 0.75 0.513874
Target:  5'- cGAAUGGgGgaagCGugGGGGGUGUGGGg -3'
miRNA:   3'- -UUUGUCgCaua-GCugCUCCCGCACCC- -5'
29617 5' -54.6 NC_006151.1 + 45092 0.7 0.795018
Target:  5'- -cGCGGUGUggcGUCGAUGGGGucgugcCGUGGGa -3'
miRNA:   3'- uuUGUCGCA---UAGCUGCUCCc-----GCACCC- -5'
29617 5' -54.6 NC_006151.1 + 49839 0.66 0.927836
Target:  5'- cGACGGCGg--CGGCGGGcccGCGcUGGGc -3'
miRNA:   3'- uUUGUCGCauaGCUGCUCc--CGC-ACCC- -5'
29617 5' -54.6 NC_006151.1 + 50624 0.67 0.922381
Target:  5'- cGGCAGCGUGcacgccUCGGCGAcGGcCGcGGGc -3'
miRNA:   3'- uUUGUCGCAU------AGCUGCUcCC-GCaCCC- -5'
29617 5' -54.6 NC_006151.1 + 56972 0.67 0.903924
Target:  5'- -cGCGGuUGUAcaugcCGACGAGGGCGgcgaagaUGGGc -3'
miRNA:   3'- uuUGUC-GCAUa----GCUGCUCCCGC-------ACCC- -5'
29617 5' -54.6 NC_006151.1 + 57144 0.67 0.922381
Target:  5'- ----uGCGcacgCGGCGGGGGCGaGGGc -3'
miRNA:   3'- uuuguCGCaua-GCUGCUCCCGCaCCC- -5'
29617 5' -54.6 NC_006151.1 + 57910 0.67 0.898132
Target:  5'- -cGCAGCuca-CGGgccCGAGGGCGUGGa -3'
miRNA:   3'- uuUGUCGcauaGCU---GCUCCCGCACCc -5'
29617 5' -54.6 NC_006151.1 + 63747 0.66 0.94274
Target:  5'- --cCGGCGcGUCGGCG-GGGCGUc-- -3'
miRNA:   3'- uuuGUCGCaUAGCUGCuCCCGCAccc -5'
29617 5' -54.6 NC_006151.1 + 63879 0.66 0.938015
Target:  5'- -cGCAGCGUGUCcGCGucGGGGCGc--- -3'
miRNA:   3'- uuUGUCGCAUAGcUGC--UCCCGCaccc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.