Results 21 - 40 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29617 | 5' | -54.6 | NC_006151.1 | + | 75846 | 0.7 | 0.780219 |
Target: 5'- -cACAGCaccccGUCGACGGGGcgccccugcguguccGCGUGGGu -3' miRNA: 3'- uuUGUCGca---UAGCUGCUCC---------------CGCACCC- -5' |
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29617 | 5' | -54.6 | NC_006151.1 | + | 66784 | 0.7 | 0.785811 |
Target: 5'- gGGACGGCGgcggCGGCGgcGGGGCccGGGg -3' miRNA: 3'- -UUUGUCGCaua-GCUGC--UCCCGcaCCC- -5' |
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29617 | 5' | -54.6 | NC_006151.1 | + | 45092 | 0.7 | 0.795018 |
Target: 5'- -cGCGGUGUggcGUCGAUGGGGucgugcCGUGGGa -3' miRNA: 3'- uuUGUCGCA---UAGCUGCUCCc-----GCACCC- -5' |
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29617 | 5' | -54.6 | NC_006151.1 | + | 21417 | 0.69 | 0.804075 |
Target: 5'- -uGCGGCGUcUCGGgccuCGGGggucgcGGCGUGGGg -3' miRNA: 3'- uuUGUCGCAuAGCU----GCUC------CCGCACCC- -5' |
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29617 | 5' | -54.6 | NC_006151.1 | + | 67769 | 0.69 | 0.804075 |
Target: 5'- -uGCGGCGUcgCGuuGAGGGCGUc-- -3' miRNA: 3'- uuUGUCGCAuaGCugCUCCCGCAccc -5' |
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29617 | 5' | -54.6 | NC_006151.1 | + | 28764 | 0.69 | 0.821702 |
Target: 5'- uGGCAGCGUgccaggacccgaGUCGGCG-GGGCGguccggcccgcGGGa -3' miRNA: 3'- uUUGUCGCA------------UAGCUGCuCCCGCa----------CCC- -5' |
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29617 | 5' | -54.6 | NC_006151.1 | + | 131871 | 0.69 | 0.825146 |
Target: 5'- cGGCGGCGUcggGUCGcagggcagcacggcCGAGGGCGacgGGGg -3' miRNA: 3'- uUUGUCGCA---UAGCu-------------GCUCCCGCa--CCC- -5' |
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29617 | 5' | -54.6 | NC_006151.1 | + | 11764 | 0.69 | 0.838626 |
Target: 5'- gAGugAGCGUGcgCGAaggggggaGAGGGCGcgUGGGc -3' miRNA: 3'- -UUugUCGCAUa-GCUg-------CUCCCGC--ACCC- -5' |
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29617 | 5' | -54.6 | NC_006151.1 | + | 129410 | 0.69 | 0.838626 |
Target: 5'- -cGCGGCGUAuUCGGCGAGGucgacguccgGCcccaaGUGGGc -3' miRNA: 3'- uuUGUCGCAU-AGCUGCUCC----------CG-----CACCC- -5' |
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29617 | 5' | -54.6 | NC_006151.1 | + | 5109 | 0.69 | 0.846805 |
Target: 5'- gAGACGGUGgcggccCGGCGcGGGCGagUGGGg -3' miRNA: 3'- -UUUGUCGCaua---GCUGCuCCCGC--ACCC- -5' |
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29617 | 5' | -54.6 | NC_006151.1 | + | 96637 | 0.69 | 0.850021 |
Target: 5'- -cGCAGCGccucgagcucggCGGCGAGGGCccGGGc -3' miRNA: 3'- uuUGUCGCaua---------GCUGCUCCCGcaCCC- -5' |
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29617 | 5' | -54.6 | NC_006151.1 | + | 104667 | 0.68 | 0.854784 |
Target: 5'- -cGCGGCGcgcgcgcUCGACGAGGGgGUGc- -3' miRNA: 3'- uuUGUCGCau-----AGCUGCUCCCgCACcc -5' |
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29617 | 5' | -54.6 | NC_006151.1 | + | 88196 | 0.68 | 0.862558 |
Target: 5'- cGGCGGCGUGgucggaccaGGCGAGGcGCGccuccgGGGg -3' miRNA: 3'- uUUGUCGCAUag-------CUGCUCC-CGCa-----CCC- -5' |
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29617 | 5' | -54.6 | NC_006151.1 | + | 18094 | 0.68 | 0.873083 |
Target: 5'- cGGCGGCcggGUUagagacgcucgucggGACGGGGGCGcUGGGg -3' miRNA: 3'- uUUGUCGca-UAG---------------CUGCUCCCGC-ACCC- -5' |
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29617 | 5' | -54.6 | NC_006151.1 | + | 95918 | 0.68 | 0.877462 |
Target: 5'- -cGC-GCGUgcaGUCGccCGAGGGCGUGcGGu -3' miRNA: 3'- uuUGuCGCA---UAGCu-GCUCCCGCAC-CC- -5' |
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29617 | 5' | -54.6 | NC_006151.1 | + | 122450 | 0.68 | 0.877462 |
Target: 5'- gAGGCGGCGUccacggCGGCGGcGGGCGccgaggccgGGGa -3' miRNA: 3'- -UUUGUCGCAua----GCUGCU-CCCGCa--------CCC- -5' |
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29617 | 5' | -54.6 | NC_006151.1 | + | 14479 | 0.68 | 0.877462 |
Target: 5'- gGGugGGCGgGUgGGCGGGGGuCGggaGGGa -3' miRNA: 3'- -UUugUCGCaUAgCUGCUCCC-GCa--CCC- -5' |
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29617 | 5' | -54.6 | NC_006151.1 | + | 23868 | 0.68 | 0.877462 |
Target: 5'- --cCGGUGgcGUUGGCGGGGGCGagcGGGu -3' miRNA: 3'- uuuGUCGCa-UAGCUGCUCCCGCa--CCC- -5' |
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29617 | 5' | -54.6 | NC_006151.1 | + | 71776 | 0.68 | 0.884582 |
Target: 5'- cGGCAGCGg--CGGCGGGGGCu---- -3' miRNA: 3'- uUUGUCGCauaGCUGCUCCCGcaccc -5' |
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29617 | 5' | -54.6 | NC_006151.1 | + | 128219 | 0.68 | 0.884582 |
Target: 5'- ---aGGCGUG-CGACGAGcuCGUGGGc -3' miRNA: 3'- uuugUCGCAUaGCUGCUCccGCACCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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