miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29617 5' -54.6 NC_006151.1 + 27502 0.83 0.184169
Target:  5'- gGAACGGgGUGggagggggugCGAUGGGGGCGUGGGg -3'
miRNA:   3'- -UUUGUCgCAUa---------GCUGCUCCCGCACCC- -5'
29617 5' -54.6 NC_006151.1 + 97369 0.76 0.428814
Target:  5'- cGGCGGCGggcgCGGCGGGGGCGUcGGc -3'
miRNA:   3'- uUUGUCGCaua-GCUGCUCCCGCAcCC- -5'
29617 5' -54.6 NC_006151.1 + 133155 0.76 0.428814
Target:  5'- --uCGGCGg--CGGCGcGGGCGUGGGc -3'
miRNA:   3'- uuuGUCGCauaGCUGCuCCCGCACCC- -5'
29617 5' -54.6 NC_006151.1 + 5245 0.75 0.48467
Target:  5'- -cGCGGCGg--CGGCGGGGGCccgGGGg -3'
miRNA:   3'- uuUGUCGCauaGCUGCUCCCGca-CCC- -5'
29617 5' -54.6 NC_006151.1 + 134996 0.75 0.494319
Target:  5'- cGGGC-GCGUcUUGGCGGGGGCGcGGGg -3'
miRNA:   3'- -UUUGuCGCAuAGCUGCUCCCGCaCCC- -5'
29617 5' -54.6 NC_006151.1 + 45035 0.75 0.513874
Target:  5'- cGAAUGGgGgaagCGugGGGGGUGUGGGg -3'
miRNA:   3'- -UUUGUCgCaua-GCugCUCCCGCACCC- -5'
29617 5' -54.6 NC_006151.1 + 97276 0.74 0.574216
Target:  5'- cGGGCAGCGccUCGGCGGcGGGCGUGu- -3'
miRNA:   3'- -UUUGUCGCauAGCUGCU-CCCGCACcc -5'
29617 5' -54.6 NC_006151.1 + 9495 0.74 0.574216
Target:  5'- -cGCGGCGUGggaGAgCGGGGcGUGUGGGg -3'
miRNA:   3'- uuUGUCGCAUag-CU-GCUCC-CGCACCC- -5'
29617 5' -54.6 NC_006151.1 + 75201 0.73 0.625697
Target:  5'- cAugAGCc---CGACGAGGGCGUcGGGg -3'
miRNA:   3'- uUugUCGcauaGCUGCUCCCGCA-CCC- -5'
29617 5' -54.6 NC_006151.1 + 4933 0.72 0.646378
Target:  5'- uGAGCAGCGgcccgucgGUCGGCGGGGGCccGUcGGc -3'
miRNA:   3'- -UUUGUCGCa-------UAGCUGCUCCCG--CAcCC- -5'
29617 5' -54.6 NC_006151.1 + 76802 0.72 0.656706
Target:  5'- -uACAGCGcccCGGCGAGGGCG-GGc -3'
miRNA:   3'- uuUGUCGCauaGCUGCUCCCGCaCCc -5'
29617 5' -54.6 NC_006151.1 + 130943 0.72 0.656706
Target:  5'- gGGGCGGCGggggGUCG-CGcGGGCGcGGGg -3'
miRNA:   3'- -UUUGUCGCa---UAGCuGCuCCCGCaCCC- -5'
29617 5' -54.6 NC_006151.1 + 26289 0.72 0.667013
Target:  5'- cGGACGGUGgg--GugGGGGGgGUGGGg -3'
miRNA:   3'- -UUUGUCGCauagCugCUCCCgCACCC- -5'
29617 5' -54.6 NC_006151.1 + 41182 0.72 0.687533
Target:  5'- -uGCGGUG-GUCGAgGGGGGUGgggGGGg -3'
miRNA:   3'- uuUGUCGCaUAGCUgCUCCCGCa--CCC- -5'
29617 5' -54.6 NC_006151.1 + 29601 0.72 0.687533
Target:  5'- cGGCcGCGg--CGGCGGGGGCugguGUGGGa -3'
miRNA:   3'- uUUGuCGCauaGCUGCUCCCG----CACCC- -5'
29617 5' -54.6 NC_006151.1 + 18139 0.71 0.697727
Target:  5'- cGAAC-GUGUccauGUCGGCGGGGGCGgcggcGGGc -3'
miRNA:   3'- -UUUGuCGCA----UAGCUGCUCCCGCa----CCC- -5'
29617 5' -54.6 NC_006151.1 + 20614 0.71 0.727934
Target:  5'- cGACGGCGUGgggUGGUGGGGGCGcccccUGGGc -3'
miRNA:   3'- uUUGUCGCAUa--GCUGCUCCCGC-----ACCC- -5'
29617 5' -54.6 NC_006151.1 + 129762 0.71 0.741786
Target:  5'- --cCAGCGcgaaggCGACGAGGGCGUcgcucccgccggcguGGGc -3'
miRNA:   3'- uuuGUCGCaua---GCUGCUCCCGCA---------------CCC- -5'
29617 5' -54.6 NC_006151.1 + 84032 0.7 0.757381
Target:  5'- cGACuGCGUGUgCGugGugcggcuGGGgGUGGGg -3'
miRNA:   3'- uUUGuCGCAUA-GCugCu------CCCgCACCC- -5'
29617 5' -54.6 NC_006151.1 + 141401 0.7 0.766029
Target:  5'- cAGCGGCGUGUcCGGCGAucggugcGGGCGcGGc -3'
miRNA:   3'- uUUGUCGCAUA-GCUGCU-------CCCGCaCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.