miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29617 5' -54.6 NC_006151.1 + 4025 0.66 0.94274
Target:  5'- -cGCGGCGUAgguccaGGCGGccucgcGGGCGcGGGc -3'
miRNA:   3'- uuUGUCGCAUag----CUGCU------CCCGCaCCC- -5'
29617 5' -54.6 NC_006151.1 + 4091 0.66 0.927836
Target:  5'- -cACGGUGcgggCGACGAGGGCGa--- -3'
miRNA:   3'- uuUGUCGCaua-GCUGCUCCCGCaccc -5'
29617 5' -54.6 NC_006151.1 + 4174 0.67 0.922381
Target:  5'- cGAGCAGCGcGgccgucaccuccUCGAggcaggcgggccCGAGGGCGgccGGGg -3'
miRNA:   3'- -UUUGUCGCaU------------AGCU------------GCUCCCGCa--CCC- -5'
29617 5' -54.6 NC_006151.1 + 4933 0.72 0.646378
Target:  5'- uGAGCAGCGgcccgucgGUCGGCGGGGGCccGUcGGc -3'
miRNA:   3'- -UUUGUCGCa-------UAGCUGCUCCCG--CAcCC- -5'
29617 5' -54.6 NC_006151.1 + 5109 0.69 0.846805
Target:  5'- gAGACGGUGgcggccCGGCGcGGGCGagUGGGg -3'
miRNA:   3'- -UUUGUCGCaua---GCUGCuCCCGC--ACCC- -5'
29617 5' -54.6 NC_006151.1 + 5245 0.75 0.48467
Target:  5'- -cGCGGCGg--CGGCGGGGGCccgGGGg -3'
miRNA:   3'- uuUGUCGCauaGCUGCUCCCGca-CCC- -5'
29617 5' -54.6 NC_006151.1 + 8073 0.67 0.910739
Target:  5'- aAGAUGGCGacggggCGugGcGGGGCGUGGc -3'
miRNA:   3'- -UUUGUCGCaua---GCugC-UCCCGCACCc -5'
29617 5' -54.6 NC_006151.1 + 9495 0.74 0.574216
Target:  5'- -cGCGGCGUGggaGAgCGGGGcGUGUGGGg -3'
miRNA:   3'- uuUGUCGCAUag-CU-GCUCC-CGCACCC- -5'
29617 5' -54.6 NC_006151.1 + 11764 0.69 0.838626
Target:  5'- gAGugAGCGUGcgCGAaggggggaGAGGGCGcgUGGGc -3'
miRNA:   3'- -UUugUCGCAUa-GCUg-------CUCCCGC--ACCC- -5'
29617 5' -54.6 NC_006151.1 + 11806 0.67 0.916681
Target:  5'- gGGGCGGgGUGggGugGGGGGCGgcgGcGGc -3'
miRNA:   3'- -UUUGUCgCAUagCugCUCCCGCa--C-CC- -5'
29617 5' -54.6 NC_006151.1 + 14479 0.68 0.877462
Target:  5'- gGGugGGCGgGUgGGCGGGGGuCGggaGGGa -3'
miRNA:   3'- -UUugUCGCaUAgCUGCUCCC-GCa--CCC- -5'
29617 5' -54.6 NC_006151.1 + 15624 0.67 0.904555
Target:  5'- aGGACGGgGacgacuUUGACGGGGccaGCGUGGGc -3'
miRNA:   3'- -UUUGUCgCau----AGCUGCUCC---CGCACCC- -5'
29617 5' -54.6 NC_006151.1 + 17364 0.66 0.939934
Target:  5'- aGAACGGCGccgugggGUcggaccguguccgcaCGACGGGGcGCGUGGc -3'
miRNA:   3'- -UUUGUCGCa------UA---------------GCUGCUCC-CGCACCc -5'
29617 5' -54.6 NC_006151.1 + 18094 0.68 0.873083
Target:  5'- cGGCGGCcggGUUagagacgcucgucggGACGGGGGCGcUGGGg -3'
miRNA:   3'- uUUGUCGca-UAG---------------CUGCUCCCGC-ACCC- -5'
29617 5' -54.6 NC_006151.1 + 18139 0.71 0.697727
Target:  5'- cGAAC-GUGUccauGUCGGCGGGGGCGgcggcGGGc -3'
miRNA:   3'- -UUUGuCGCA----UAGCUGCUCCCGCa----CCC- -5'
29617 5' -54.6 NC_006151.1 + 19364 0.67 0.904555
Target:  5'- -uGCAGCGUGUagaGGCccgugucguuGGGCGUGGc -3'
miRNA:   3'- uuUGUCGCAUAg--CUGcu--------CCCGCACCc -5'
29617 5' -54.6 NC_006151.1 + 20614 0.71 0.727934
Target:  5'- cGACGGCGUGgggUGGUGGGGGCGcccccUGGGc -3'
miRNA:   3'- uUUGUCGCAUa--GCUGCUCCCGC-----ACCC- -5'
29617 5' -54.6 NC_006151.1 + 21417 0.69 0.804075
Target:  5'- -uGCGGCGUcUCGGgccuCGGGggucgcGGCGUGGGg -3'
miRNA:   3'- uuUGUCGCAuAGCU----GCUC------CCGCACCC- -5'
29617 5' -54.6 NC_006151.1 + 22196 0.66 0.927836
Target:  5'- uAGACGuccGCGgggcCGACGaAGGGCGaGGGg -3'
miRNA:   3'- -UUUGU---CGCaua-GCUGC-UCCCGCaCCC- -5'
29617 5' -54.6 NC_006151.1 + 23868 0.68 0.877462
Target:  5'- --cCGGUGgcGUUGGCGGGGGCGagcGGGu -3'
miRNA:   3'- uuuGUCGCa-UAGCUGCUCCCGCa--CCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.