miRNA display CGI


Results 1 - 20 of 81 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29617 5' -54.6 NC_006151.1 + 141401 0.7 0.766029
Target:  5'- cAGCGGCGUGUcCGGCGAucggugcGGGCGcGGc -3'
miRNA:   3'- uUUGUCGCAUA-GCUGCU-------CCCGCaCCc -5'
29617 5' -54.6 NC_006151.1 + 134996 0.75 0.494319
Target:  5'- cGGGC-GCGUcUUGGCGGGGGCGcGGGg -3'
miRNA:   3'- -UUUGuCGCAuAGCUGCUCCCGCaCCC- -5'
29617 5' -54.6 NC_006151.1 + 133155 0.76 0.428814
Target:  5'- --uCGGCGg--CGGCGcGGGCGUGGGc -3'
miRNA:   3'- uuuGUCGCauaGCUGCuCCCGCACCC- -5'
29617 5' -54.6 NC_006151.1 + 131871 0.69 0.825146
Target:  5'- cGGCGGCGUcggGUCGcagggcagcacggcCGAGGGCGacgGGGg -3'
miRNA:   3'- uUUGUCGCA---UAGCu-------------GCUCCCGCa--CCC- -5'
29617 5' -54.6 NC_006151.1 + 130943 0.72 0.656706
Target:  5'- gGGGCGGCGggggGUCG-CGcGGGCGcGGGg -3'
miRNA:   3'- -UUUGUCGCa---UAGCuGCuCCCGCaCCC- -5'
29617 5' -54.6 NC_006151.1 + 129762 0.71 0.741786
Target:  5'- --cCAGCGcgaaggCGACGAGGGCGUcgcucccgccggcguGGGc -3'
miRNA:   3'- uuuGUCGCaua---GCUGCUCCCGCA---------------CCC- -5'
29617 5' -54.6 NC_006151.1 + 129410 0.69 0.838626
Target:  5'- -cGCGGCGUAuUCGGCGAGGucgacguccgGCcccaaGUGGGc -3'
miRNA:   3'- uuUGUCGCAU-AGCUGCUCC----------CG-----CACCC- -5'
29617 5' -54.6 NC_006151.1 + 128342 0.67 0.904555
Target:  5'- --cCAGCGUcagGUUGAUGAGGgucugcGCGUGGu -3'
miRNA:   3'- uuuGUCGCA---UAGCUGCUCC------CGCACCc -5'
29617 5' -54.6 NC_006151.1 + 128219 0.68 0.884582
Target:  5'- ---aGGCGUG-CGACGAGcuCGUGGGc -3'
miRNA:   3'- uuugUCGCAUaGCUGCUCccGCACCC- -5'
29617 5' -54.6 NC_006151.1 + 126265 0.67 0.891473
Target:  5'- aGGACGGCG--UCGACGAaGGcGaCGUGGa -3'
miRNA:   3'- -UUUGUCGCauAGCUGCU-CC-C-GCACCc -5'
29617 5' -54.6 NC_006151.1 + 122967 0.68 0.884582
Target:  5'- -cGCGGaCGccggCGACGGGGGCGUcGGc -3'
miRNA:   3'- uuUGUC-GCaua-GCUGCUCCCGCAcCC- -5'
29617 5' -54.6 NC_006151.1 + 122450 0.68 0.877462
Target:  5'- gAGGCGGCGUccacggCGGCGGcGGGCGccgaggccgGGGa -3'
miRNA:   3'- -UUUGUCGCAua----GCUGCU-CCCGCa--------CCC- -5'
29617 5' -54.6 NC_006151.1 + 118980 0.67 0.904555
Target:  5'- --cCGGCGUGUaCGACGAGGagccccccGCGcUGGa -3'
miRNA:   3'- uuuGUCGCAUA-GCUGCUCC--------CGC-ACCc -5'
29617 5' -54.6 NC_006151.1 + 104667 0.68 0.854784
Target:  5'- -cGCGGCGcgcgcgcUCGACGAGGGgGUGc- -3'
miRNA:   3'- uuUGUCGCau-----AGCUGCUCCCgCACcc -5'
29617 5' -54.6 NC_006151.1 + 103673 0.67 0.890795
Target:  5'- aAGGCGGCGcgcgCGGCGGGGGUgcugcgcgccgccGUGGa -3'
miRNA:   3'- -UUUGUCGCaua-GCUGCUCCCG-------------CACCc -5'
29617 5' -54.6 NC_006151.1 + 97369 0.76 0.428814
Target:  5'- cGGCGGCGggcgCGGCGGGGGCGUcGGc -3'
miRNA:   3'- uUUGUCGCaua-GCUGCUCCCGCAcCC- -5'
29617 5' -54.6 NC_006151.1 + 97276 0.74 0.574216
Target:  5'- cGGGCAGCGccUCGGCGGcGGGCGUGu- -3'
miRNA:   3'- -UUUGUCGCauAGCUGCU-CCCGCACcc -5'
29617 5' -54.6 NC_006151.1 + 96637 0.69 0.850021
Target:  5'- -cGCAGCGccucgagcucggCGGCGAGGGCccGGGc -3'
miRNA:   3'- uuUGUCGCaua---------GCUGCUCCCGcaCCC- -5'
29617 5' -54.6 NC_006151.1 + 95918 0.68 0.877462
Target:  5'- -cGC-GCGUgcaGUCGccCGAGGGCGUGcGGu -3'
miRNA:   3'- uuUGuCGCA---UAGCu-GCUCCCGCAC-CC- -5'
29617 5' -54.6 NC_006151.1 + 91731 0.67 0.922381
Target:  5'- cGAACAGCGacAUCG-CGGcGGGCGagcGGGc -3'
miRNA:   3'- -UUUGUCGCa-UAGCuGCU-CCCGCa--CCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.