miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29618 3' -59.3 NC_006151.1 + 17057 0.78 0.200706
Target:  5'- gCGUCGGCGUCCGUCaGCCCgggCCgCCGCc -3'
miRNA:   3'- gGCAGCUGUAGGCAG-CGGG---GGaGGUG- -5'
29618 3' -59.3 NC_006151.1 + 36625 0.77 0.242541
Target:  5'- gCCGgucUCGGCGcCCGgcggcggcggCGCCCCCUCCGCc -3'
miRNA:   3'- -GGC---AGCUGUaGGCa---------GCGGGGGAGGUG- -5'
29618 3' -59.3 NC_006151.1 + 52356 0.76 0.266058
Target:  5'- gUCGUCGuCGUCCGccggcgCGCCCCCggggcCCGCg -3'
miRNA:   3'- -GGCAGCuGUAGGCa-----GCGGGGGa----GGUG- -5'
29618 3' -59.3 NC_006151.1 + 18433 0.76 0.291387
Target:  5'- gCCGcCGGCGggCGUCGCCCgCCUCCuCg -3'
miRNA:   3'- -GGCaGCUGUagGCAGCGGG-GGAGGuG- -5'
29618 3' -59.3 NC_006151.1 + 101796 0.75 0.298007
Target:  5'- cCCGUCcuCG-CCGUCGCCCCCguccCCGCc -3'
miRNA:   3'- -GGCAGcuGUaGGCAGCGGGGGa---GGUG- -5'
29618 3' -59.3 NC_006151.1 + 117863 0.74 0.354392
Target:  5'- gCCGcCGACGUCgCGuUCGCCCCUcggcgccgacaccUCCGCc -3'
miRNA:   3'- -GGCaGCUGUAG-GC-AGCGGGGG-------------AGGUG- -5'
29618 3' -59.3 NC_006151.1 + 69479 0.74 0.378485
Target:  5'- aCCGUCG-CcgCCGccucgagCGCCCCCgcgCCGCc -3'
miRNA:   3'- -GGCAGCuGuaGGCa------GCGGGGGa--GGUG- -5'
29618 3' -59.3 NC_006151.1 + 20399 0.73 0.394602
Target:  5'- aCCGgggucaUCG-CcgUCGUCGCCCCCUCCuCg -3'
miRNA:   3'- -GGC------AGCuGuaGGCAGCGGGGGAGGuG- -5'
29618 3' -59.3 NC_006151.1 + 1696 0.73 0.411156
Target:  5'- gCCG-CGGCcgCCGcCGCCgCUUCCACc -3'
miRNA:   3'- -GGCaGCUGuaGGCaGCGGgGGAGGUG- -5'
29618 3' -59.3 NC_006151.1 + 77161 0.72 0.436777
Target:  5'- cCCGUCaucuucGCGUCCGcCGCCgCgUCCACg -3'
miRNA:   3'- -GGCAGc-----UGUAGGCaGCGGgGgAGGUG- -5'
29618 3' -59.3 NC_006151.1 + 127602 0.72 0.436777
Target:  5'- -gGUCGACGUacaCGUCuuCCUCCUCCACc -3'
miRNA:   3'- ggCAGCUGUAg--GCAGc-GGGGGAGGUG- -5'
29618 3' -59.3 NC_006151.1 + 14029 0.72 0.44552
Target:  5'- cCCGUCGGC--CCG--GCCCCCUCgACg -3'
miRNA:   3'- -GGCAGCUGuaGGCagCGGGGGAGgUG- -5'
29618 3' -59.3 NC_006151.1 + 38390 0.72 0.454359
Target:  5'- gCCGgCGGCggCgGgCGCCCCCUCCGg -3'
miRNA:   3'- -GGCaGCUGuaGgCaGCGGGGGAGGUg -5'
29618 3' -59.3 NC_006151.1 + 99365 0.72 0.463293
Target:  5'- gUCGUCGGCGgcgUCGUgcacCGCCUCCUCgACg -3'
miRNA:   3'- -GGCAGCUGUa--GGCA----GCGGGGGAGgUG- -5'
29618 3' -59.3 NC_006151.1 + 123352 0.72 0.481431
Target:  5'- cCCGUgGACG-CCG-CGCUCCUUCCGg -3'
miRNA:   3'- -GGCAgCUGUaGGCaGCGGGGGAGGUg -5'
29618 3' -59.3 NC_006151.1 + 75854 0.72 0.481431
Target:  5'- cCCGUCGACGggg--CGCCCCUgcgugUCCGCg -3'
miRNA:   3'- -GGCAGCUGUaggcaGCGGGGG-----AGGUG- -5'
29618 3' -59.3 NC_006151.1 + 8846 0.71 0.490628
Target:  5'- cCCGUgCG-UGUCuCGcUCGCCCUCUCCGCc -3'
miRNA:   3'- -GGCA-GCuGUAG-GC-AGCGGGGGAGGUG- -5'
29618 3' -59.3 NC_006151.1 + 59440 0.71 0.490628
Target:  5'- gCGUCGGCcgCCGcCGCCgCgaCCGCg -3'
miRNA:   3'- gGCAGCUGuaGGCaGCGGgGgaGGUG- -5'
29618 3' -59.3 NC_006151.1 + 64339 0.71 0.490628
Target:  5'- aCGUCGGCGggaagcgcgggCCGUCGgCCCC-CCAg -3'
miRNA:   3'- gGCAGCUGUa----------GGCAGCgGGGGaGGUg -5'
29618 3' -59.3 NC_006151.1 + 36815 0.71 0.509261
Target:  5'- gCCGUCGAgA-CCGUCGCCCgCggCCcCg -3'
miRNA:   3'- -GGCAGCUgUaGGCAGCGGGgGa-GGuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.