miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29618 3' -59.3 NC_006151.1 + 1696 0.73 0.411156
Target:  5'- gCCG-CGGCcgCCGcCGCCgCUUCCACc -3'
miRNA:   3'- -GGCaGCUGuaGGCaGCGGgGGAGGUG- -5'
29618 3' -59.3 NC_006151.1 + 2179 0.69 0.6495
Target:  5'- gCCGgcccCGGCGcCCGagGCCCCCgcgggccggugggucUCCACg -3'
miRNA:   3'- -GGCa---GCUGUaGGCagCGGGGG---------------AGGUG- -5'
29618 3' -59.3 NC_006151.1 + 7624 0.68 0.694686
Target:  5'- cCCG-CGACccccgCgGUCGCCCCaC-CCGCg -3'
miRNA:   3'- -GGCaGCUGua---GgCAGCGGGG-GaGGUG- -5'
29618 3' -59.3 NC_006151.1 + 8846 0.71 0.490628
Target:  5'- cCCGUgCG-UGUCuCGcUCGCCCUCUCCGCc -3'
miRNA:   3'- -GGCA-GCuGUAG-GC-AGCGGGGGAGGUG- -5'
29618 3' -59.3 NC_006151.1 + 9142 0.66 0.778459
Target:  5'- cCCG-CGGCAcgcgcccagaccuUCCucUC-CCCCCUCCACc -3'
miRNA:   3'- -GGCaGCUGU-------------AGGc-AGcGGGGGAGGUG- -5'
29618 3' -59.3 NC_006151.1 + 13747 0.66 0.770331
Target:  5'- cCCGUCccGCGggCCGgacCGCCCCCUUCcCg -3'
miRNA:   3'- -GGCAGc-UGUa-GGCa--GCGGGGGAGGuG- -5'
29618 3' -59.3 NC_006151.1 + 14029 0.72 0.44552
Target:  5'- cCCGUCGGC--CCG--GCCCCCUCgACg -3'
miRNA:   3'- -GGCAGCUGuaGGCagCGGGGGAGgUG- -5'
29618 3' -59.3 NC_006151.1 + 14395 0.67 0.755655
Target:  5'- -gGUCGcGCGUCCGUCGCCUaggugagucggggggCUUCC-Cg -3'
miRNA:   3'- ggCAGC-UGUAGGCAGCGGG---------------GGAGGuG- -5'
29618 3' -59.3 NC_006151.1 + 14797 0.7 0.547363
Target:  5'- cCCGcUCGACcgCC--CGCCCCCgacCCACc -3'
miRNA:   3'- -GGC-AGCUGuaGGcaGCGGGGGa--GGUG- -5'
29618 3' -59.3 NC_006151.1 + 14895 0.68 0.704399
Target:  5'- cCCGUCGACccgcCCGg-GCCCCggcCCACg -3'
miRNA:   3'- -GGCAGCUGua--GGCagCGGGGga-GGUG- -5'
29618 3' -59.3 NC_006151.1 + 17057 0.78 0.200706
Target:  5'- gCGUCGGCGUCCGUCaGCCCgggCCgCCGCc -3'
miRNA:   3'- gGCAGCUGUAGGCAG-CGGG---GGaGGUG- -5'
29618 3' -59.3 NC_006151.1 + 18433 0.76 0.291387
Target:  5'- gCCGcCGGCGggCGUCGCCCgCCUCCuCg -3'
miRNA:   3'- -GGCaGCUGUagGCAGCGGG-GGAGGuG- -5'
29618 3' -59.3 NC_006151.1 + 19765 0.67 0.723646
Target:  5'- gCCGUCGAgGUCauCGUCGCCggCCUCgGu -3'
miRNA:   3'- -GGCAGCUgUAG--GCAGCGGg-GGAGgUg -5'
29618 3' -59.3 NC_006151.1 + 20399 0.73 0.394602
Target:  5'- aCCGgggucaUCG-CcgUCGUCGCCCCCUCCuCg -3'
miRNA:   3'- -GGC------AGCuGuaGGCAGCGGGGGAGGuG- -5'
29618 3' -59.3 NC_006151.1 + 20657 0.7 0.57652
Target:  5'- gCCGUCagcacaaaGAgGUCCGUgGUCCCgUUCACg -3'
miRNA:   3'- -GGCAG--------CUgUAGGCAgCGGGGgAGGUG- -5'
29618 3' -59.3 NC_006151.1 + 23126 0.66 0.80566
Target:  5'- cCCG-CGccccuCcUCCGUCGCCgggCCCUCgGCg -3'
miRNA:   3'- -GGCaGCu----GuAGGCAGCGG---GGGAGgUG- -5'
29618 3' -59.3 NC_006151.1 + 25404 0.66 0.80566
Target:  5'- aCCG-CGACGggggcgCCGcCGCCCCa--CGCg -3'
miRNA:   3'- -GGCaGCUGUa-----GGCaGCGGGGgagGUG- -5'
29618 3' -59.3 NC_006151.1 + 25726 0.69 0.596152
Target:  5'- cCCGaUGACAcgccUCCGUCcuuucuCUCCCUCCACc -3'
miRNA:   3'- -GGCaGCUGU----AGGCAGc-----GGGGGAGGUG- -5'
29618 3' -59.3 NC_006151.1 + 26385 0.7 0.564808
Target:  5'- cCCGgcgggCGGCGUCCuucccgcccuccUCGCCCUCUCCGu -3'
miRNA:   3'- -GGCa----GCUGUAGGc-----------AGCGGGGGAGGUg -5'
29618 3' -59.3 NC_006151.1 + 26554 0.68 0.665285
Target:  5'- cCCGcCGuCGUCCGagcccgaGCCCUCUCCGu -3'
miRNA:   3'- -GGCaGCuGUAGGCag-----CGGGGGAGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.