miRNA display CGI


Results 41 - 60 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29618 5' -51.4 NC_006151.1 + 104063 0.67 0.982978
Target:  5'- gCGCGGcCGAcGCGgCGCUGcgCCGCGc -3'
miRNA:   3'- gGUGUUuGCUuCGCaGCGACa-GGUGC- -5'
29618 5' -51.4 NC_006151.1 + 106115 0.67 0.980918
Target:  5'- gCCGCGgaGACGuacGCGgccgUGCUGgCCACGa -3'
miRNA:   3'- -GGUGU--UUGCuu-CGCa---GCGACaGGUGC- -5'
29618 5' -51.4 NC_006151.1 + 30611 0.67 0.980918
Target:  5'- aCGCGGGCGGucGGCGUgcgCGCUGUgCGgGu -3'
miRNA:   3'- gGUGUUUGCU--UCGCA---GCGACAgGUgC- -5'
29618 5' -51.4 NC_006151.1 + 81744 0.67 0.980918
Target:  5'- gUC-CAGGCGgcGCGgaGCUgGUCCGCGg -3'
miRNA:   3'- -GGuGUUUGCuuCGCagCGA-CAGGUGC- -5'
29618 5' -51.4 NC_006151.1 + 139085 0.67 0.978678
Target:  5'- uCCGCcug-GggGCGcgcauggCGCUGUUCACGa -3'
miRNA:   3'- -GGUGuuugCuuCGCa------GCGACAGGUGC- -5'
29618 5' -51.4 NC_006151.1 + 79615 0.67 0.978678
Target:  5'- gCCACAAccCGGAGCGcCGCcGUcgCCGCu -3'
miRNA:   3'- -GGUGUUu-GCUUCGCaGCGaCA--GGUGc -5'
29618 5' -51.4 NC_006151.1 + 67744 0.67 0.97797
Target:  5'- gCACGgcgcGGCGGccccgucggggugcGGCGUCGCguugagggcGUCCACGu -3'
miRNA:   3'- gGUGU----UUGCU--------------UCGCAGCGa--------CAGGUGC- -5'
29618 5' -51.4 NC_006151.1 + 59146 0.68 0.976249
Target:  5'- cCCGCGGGCGGguccaggccGGCGUCGCgcagcagCGCGg -3'
miRNA:   3'- -GGUGUUUGCU---------UCGCAGCGacag---GUGC- -5'
29618 5' -51.4 NC_006151.1 + 131747 0.68 0.976249
Target:  5'- gCC-CGGGCGAGGCGaccgUCGCgGUcgcgaCCGCGg -3'
miRNA:   3'- -GGuGUUUGCUUCGC----AGCGaCA-----GGUGC- -5'
29618 5' -51.4 NC_006151.1 + 81163 0.68 0.976249
Target:  5'- gCACGAGCGGguuGGCGa---UGUCCACGc -3'
miRNA:   3'- gGUGUUUGCU---UCGCagcgACAGGUGC- -5'
29618 5' -51.4 NC_006151.1 + 53067 0.68 0.976249
Target:  5'- aCCACGaagcugucGACGAGGCGcaggUGCUcGUCCgucaGCGg -3'
miRNA:   3'- -GGUGU--------UUGCUUCGCa---GCGA-CAGG----UGC- -5'
29618 5' -51.4 NC_006151.1 + 135266 0.68 0.973623
Target:  5'- gCGCAgggccugcucGACGAGGuCGUCcgUGUCCGCGu -3'
miRNA:   3'- gGUGU----------UUGCUUC-GCAGcgACAGGUGC- -5'
29618 5' -51.4 NC_006151.1 + 20555 0.68 0.970793
Target:  5'- uCCACGAcGCGcAGGCuGUCGUg--CCACGa -3'
miRNA:   3'- -GGUGUU-UGC-UUCG-CAGCGacaGGUGC- -5'
29618 5' -51.4 NC_006151.1 + 46949 0.68 0.970793
Target:  5'- gCCGCGGACuGggGCGacccugUUGCUG-CUGCGg -3'
miRNA:   3'- -GGUGUUUG-CuuCGC------AGCGACaGGUGC- -5'
29618 5' -51.4 NC_006151.1 + 60096 0.68 0.970793
Target:  5'- gCCGCGAACGccGGGCGgcagcggCGCUGgaaCUGCGc -3'
miRNA:   3'- -GGUGUUUGC--UUCGCa------GCGACa--GGUGC- -5'
29618 5' -51.4 NC_006151.1 + 119278 0.68 0.970793
Target:  5'- cCCGCAGACGGAcaaggacgggcGCGUgcUGCUG-CaCACGg -3'
miRNA:   3'- -GGUGUUUGCUU-----------CGCA--GCGACaG-GUGC- -5'
29618 5' -51.4 NC_006151.1 + 142240 0.68 0.970793
Target:  5'- gUCGC-GACGAGGCGUCGgUcaUCGCGg -3'
miRNA:   3'- -GGUGuUUGCUUCGCAGCgAcaGGUGC- -5'
29618 5' -51.4 NC_006151.1 + 102849 0.68 0.970793
Target:  5'- aCCGC-AACGgcGCGcagCGCU-UCCGCGu -3'
miRNA:   3'- -GGUGuUUGCuuCGCa--GCGAcAGGUGC- -5'
29618 5' -51.4 NC_006151.1 + 139550 0.68 0.967751
Target:  5'- uCgGgGAGCGAggAGCGgCGCccgGUCCGCGa -3'
miRNA:   3'- -GgUgUUUGCU--UCGCaGCGa--CAGGUGC- -5'
29618 5' -51.4 NC_006151.1 + 115955 0.68 0.967751
Target:  5'- gCGCGAGCGcGAGCGUCGUgaagcacagguUGUgCGCc -3'
miRNA:   3'- gGUGUUUGC-UUCGCAGCG-----------ACAgGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.