miRNA display CGI


Results 21 - 40 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29618 5' -51.4 NC_006151.1 + 129117 0.66 0.990865
Target:  5'- gCCAgGGcCGAGGCG-CGCUGggcgCCAa- -3'
miRNA:   3'- -GGUgUUuGCUUCGCaGCGACa---GGUgc -5'
29618 5' -51.4 NC_006151.1 + 61298 0.66 0.990865
Target:  5'- -aGCucGACGGGcGCGUCGCgcugcagGUCCAgGg -3'
miRNA:   3'- ggUGu-UUGCUU-CGCAGCGa------CAGGUgC- -5'
29618 5' -51.4 NC_006151.1 + 109258 0.66 0.990865
Target:  5'- uCCGCuGGCGGccccGaCGUCGCUGgCCGCc -3'
miRNA:   3'- -GGUGuUUGCUu---C-GCAGCGACaGGUGc -5'
29618 5' -51.4 NC_006151.1 + 78231 0.66 0.989579
Target:  5'- cUCACGGGCGcgcAGCGguucgCGCUGUaCCAg- -3'
miRNA:   3'- -GGUGUUUGCu--UCGCa----GCGACA-GGUgc -5'
29618 5' -51.4 NC_006151.1 + 82575 0.66 0.989579
Target:  5'- aCCAC--GCGGAGcCGUCGCcGaCCAgGa -3'
miRNA:   3'- -GGUGuuUGCUUC-GCAGCGaCaGGUgC- -5'
29618 5' -51.4 NC_006151.1 + 135534 0.66 0.989579
Target:  5'- gCgGCGAGCGggGCGgggaggaucaCGUUGagCACGg -3'
miRNA:   3'- -GgUGUUUGCuuCGCa---------GCGACagGUGC- -5'
29618 5' -51.4 NC_006151.1 + 37960 0.66 0.989579
Target:  5'- cCCGCGAgcugGCGGAcgccuGCGUC-CUGgccugCCGCGg -3'
miRNA:   3'- -GGUGUU----UGCUU-----CGCAGcGACa----GGUGC- -5'
29618 5' -51.4 NC_006151.1 + 81857 0.66 0.988157
Target:  5'- -aGCAGGCGc-GCGUCGCUcUCgACGc -3'
miRNA:   3'- ggUGUUUGCuuCGCAGCGAcAGgUGC- -5'
29618 5' -51.4 NC_006151.1 + 90131 0.66 0.988157
Target:  5'- -gGCAGGCGggGCGguagugCGCgucggGcCCGCu -3'
miRNA:   3'- ggUGUUUGCuuCGCa-----GCGa----CaGGUGc -5'
29618 5' -51.4 NC_006151.1 + 68170 0.67 0.986588
Target:  5'- gCCACcAGCGcguaggcGGCGUCGUUGagcaggaCCACGa -3'
miRNA:   3'- -GGUGuUUGCu------UCGCAGCGACa------GGUGC- -5'
29618 5' -51.4 NC_006151.1 + 89735 0.67 0.986588
Target:  5'- gCCGCGGugGuGGGCGagacgaGCUGguugCCGCGg -3'
miRNA:   3'- -GGUGUUugC-UUCGCag----CGACa---GGUGC- -5'
29618 5' -51.4 NC_006151.1 + 130546 0.67 0.986588
Target:  5'- cCCGC--GCGAgGGCGgcgCGCUGccgccCCACGa -3'
miRNA:   3'- -GGUGuuUGCU-UCGCa--GCGACa----GGUGC- -5'
29618 5' -51.4 NC_006151.1 + 135354 0.67 0.986588
Target:  5'- uCCGCGAGcCGccGCG-CGUUGgCCGCGu -3'
miRNA:   3'- -GGUGUUU-GCuuCGCaGCGACaGGUGC- -5'
29618 5' -51.4 NC_006151.1 + 94018 0.67 0.986588
Target:  5'- cCCGCAGcgccgcgcgcACGuAGCGcUCGCgcgCCGCGg -3'
miRNA:   3'- -GGUGUU----------UGCuUCGC-AGCGacaGGUGC- -5'
29618 5' -51.4 NC_006151.1 + 70091 0.67 0.984865
Target:  5'- gCGCGugggcGGCGAAGgG-CGCgagcggGUCCACGc -3'
miRNA:   3'- gGUGU-----UUGCUUCgCaGCGa-----CAGGUGC- -5'
29618 5' -51.4 NC_006151.1 + 56927 0.67 0.984865
Target:  5'- aCACAAauggcgGCGggGCGUCGCcGg-CGCu -3'
miRNA:   3'- gGUGUU------UGCuuCGCAGCGaCagGUGc -5'
29618 5' -51.4 NC_006151.1 + 122603 0.67 0.984865
Target:  5'- uCCACGAACcAGGCGgugCGggcccucgacCUGUUCACGc -3'
miRNA:   3'- -GGUGUUUGcUUCGCa--GC----------GACAGGUGC- -5'
29618 5' -51.4 NC_006151.1 + 3233 0.67 0.983753
Target:  5'- gCCGCAuccaggcggcgcggcGGCGGAGCGggGCg--CCGCGg -3'
miRNA:   3'- -GGUGU---------------UUGCUUCGCagCGacaGGUGC- -5'
29618 5' -51.4 NC_006151.1 + 129765 0.67 0.982978
Target:  5'- gCGCGAagGCGAcgagGGCGUCGCUc-CCGCc -3'
miRNA:   3'- gGUGUU--UGCU----UCGCAGCGAcaGGUGc -5'
29618 5' -51.4 NC_006151.1 + 121698 0.67 0.982978
Target:  5'- gCCAU-GGCGGAGCGgcggcUCGUggcgGUCCugGg -3'
miRNA:   3'- -GGUGuUUGCUUCGC-----AGCGa---CAGGugC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.