Results 21 - 40 of 117 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29618 | 5' | -51.4 | NC_006151.1 | + | 53961 | 0.66 | 0.99306 |
Target: 5'- aCCACGccAGCGGcGGCGgCGCc-UCCGCGg -3' miRNA: 3'- -GGUGU--UUGCU-UCGCaGCGacAGGUGC- -5' |
|||||||
29618 | 5' | -51.4 | NC_006151.1 | + | 56927 | 0.67 | 0.984865 |
Target: 5'- aCACAAauggcgGCGggGCGUCGCcGg-CGCu -3' miRNA: 3'- gGUGUU------UGCuuCGCAGCGaCagGUGc -5' |
|||||||
29618 | 5' | -51.4 | NC_006151.1 | + | 57231 | 0.72 | 0.86475 |
Target: 5'- gUCGCAGGCGgcGCG-CGCggccucggcGUCCGCGc -3' miRNA: 3'- -GGUGUUUGCuuCGCaGCGa--------CAGGUGC- -5' |
|||||||
29618 | 5' | -51.4 | NC_006151.1 | + | 57489 | 0.7 | 0.929963 |
Target: 5'- cUCGCAGGCGAcGCGcacgCGCUcggCCGCGg -3' miRNA: 3'- -GGUGUUUGCUuCGCa---GCGAca-GGUGC- -5' |
|||||||
29618 | 5' | -51.4 | NC_006151.1 | + | 58453 | 0.83 | 0.31916 |
Target: 5'- gCGCGcGCGcGGCGUCGCgGUCCACGa -3' miRNA: 3'- gGUGUuUGCuUCGCAGCGaCAGGUGC- -5' |
|||||||
29618 | 5' | -51.4 | NC_006151.1 | + | 58928 | 0.7 | 0.924543 |
Target: 5'- gCCGCGGcCGucauAGCGcCGCaaaGUCCACGg -3' miRNA: 3'- -GGUGUUuGCu---UCGCaGCGa--CAGGUGC- -5' |
|||||||
29618 | 5' | -51.4 | NC_006151.1 | + | 59146 | 0.68 | 0.976249 |
Target: 5'- cCCGCGGGCGGguccaggccGGCGUCGCgcagcagCGCGg -3' miRNA: 3'- -GGUGUUUGCU---------UCGCAGCGacag---GUGC- -5' |
|||||||
29618 | 5' | -51.4 | NC_006151.1 | + | 59288 | 0.73 | 0.832289 |
Target: 5'- aCACGAGCGcGGCGUgGC-GcCCGCGg -3' miRNA: 3'- gGUGUUUGCuUCGCAgCGaCaGGUGC- -5' |
|||||||
29618 | 5' | -51.4 | NC_006151.1 | + | 59785 | 0.75 | 0.729066 |
Target: 5'- gCCACGAgguacuucuccACGAAGguggccaccuCGcCGCUGUCCGCGa -3' miRNA: 3'- -GGUGUU-----------UGCUUC----------GCaGCGACAGGUGC- -5' |
|||||||
29618 | 5' | -51.4 | NC_006151.1 | + | 60096 | 0.68 | 0.970793 |
Target: 5'- gCCGCGAACGccGGGCGgcagcggCGCUGgaaCUGCGc -3' miRNA: 3'- -GGUGUUUGC--UUCGCa------GCGACa--GGUGC- -5' |
|||||||
29618 | 5' | -51.4 | NC_006151.1 | + | 61298 | 0.66 | 0.990865 |
Target: 5'- -aGCucGACGGGcGCGUCGCgcugcagGUCCAgGg -3' miRNA: 3'- ggUGu-UUGCUU-CGCAGCGa------CAGGUgC- -5' |
|||||||
29618 | 5' | -51.4 | NC_006151.1 | + | 64494 | 0.66 | 0.990865 |
Target: 5'- cCCGCGGGCGcGGGCGgcgggCGCgcgCCGCc -3' miRNA: 3'- -GGUGUUUGC-UUCGCa----GCGacaGGUGc -5' |
|||||||
29618 | 5' | -51.4 | NC_006151.1 | + | 65171 | 0.76 | 0.657045 |
Target: 5'- gCgGCGcGCGAGGCGgaagCGCggGUCCGCGa -3' miRNA: 3'- -GgUGUuUGCUUCGCa---GCGa-CAGGUGC- -5' |
|||||||
29618 | 5' | -51.4 | NC_006151.1 | + | 65400 | 0.66 | 0.990865 |
Target: 5'- gCCGUGAGCGAgcGGCGguaCGC-GUCCAUGu -3' miRNA: 3'- -GGUGUUUGCU--UCGCa--GCGaCAGGUGC- -5' |
|||||||
29618 | 5' | -51.4 | NC_006151.1 | + | 65502 | 0.7 | 0.935134 |
Target: 5'- aCGCcGGCGGAGCG-CGCcuccUCCGCGg -3' miRNA: 3'- gGUGuUUGCUUCGCaGCGac--AGGUGC- -5' |
|||||||
29618 | 5' | -51.4 | NC_006151.1 | + | 67273 | 0.73 | 0.823679 |
Target: 5'- uCCACGcGCGccuGCGcCGCUGgugCCGCGa -3' miRNA: 3'- -GGUGUuUGCuu-CGCaGCGACa--GGUGC- -5' |
|||||||
29618 | 5' | -51.4 | NC_006151.1 | + | 67529 | 0.7 | 0.935134 |
Target: 5'- gCCAcCAGGCGccagccGGCGUCGUUGaCCACc -3' miRNA: 3'- -GGU-GUUUGCu-----UCGCAGCGACaGGUGc -5' |
|||||||
29618 | 5' | -51.4 | NC_006151.1 | + | 67744 | 0.67 | 0.97797 |
Target: 5'- gCACGgcgcGGCGGccccgucggggugcGGCGUCGCguugagggcGUCCACGu -3' miRNA: 3'- gGUGU----UUGCU--------------UCGCAGCGa--------CAGGUGC- -5' |
|||||||
29618 | 5' | -51.4 | NC_006151.1 | + | 68170 | 0.67 | 0.986588 |
Target: 5'- gCCACcAGCGcguaggcGGCGUCGUUGagcaggaCCACGa -3' miRNA: 3'- -GGUGuUUGCu------UCGCAGCGACa------GGUGC- -5' |
|||||||
29618 | 5' | -51.4 | NC_006151.1 | + | 69002 | 0.66 | 0.992022 |
Target: 5'- aCGCAGGCGuuGCGgaagCGCUccagcagcaccaGcUCCGCGg -3' miRNA: 3'- gGUGUUUGCuuCGCa---GCGA------------C-AGGUGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home