miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29618 5' -51.4 NC_006151.1 + 3233 0.67 0.983753
Target:  5'- gCCGCAuccaggcggcgcggcGGCGGAGCGggGCg--CCGCGg -3'
miRNA:   3'- -GGUGU---------------UUGCUUCGCagCGacaGGUGC- -5'
29618 5' -51.4 NC_006151.1 + 18697 0.77 0.604779
Target:  5'- gCGCGGGCGGcgccGGCGUCGUgacgccGUCCACGu -3'
miRNA:   3'- gGUGUUUGCU----UCGCAGCGa-----CAGGUGC- -5'
29618 5' -51.4 NC_006151.1 + 19425 0.72 0.872335
Target:  5'- aCCGCuccgggguGACGAugGGCGgcucgCGCUGgagCCGCGg -3'
miRNA:   3'- -GGUGu-------UUGCU--UCGCa----GCGACa--GGUGC- -5'
29618 5' -51.4 NC_006151.1 + 20555 0.68 0.970793
Target:  5'- uCCACGAcGCGcAGGCuGUCGUg--CCACGa -3'
miRNA:   3'- -GGUGUU-UGC-UUCG-CAGCGacaGGUGC- -5'
29618 5' -51.4 NC_006151.1 + 21163 0.7 0.933609
Target:  5'- gCUACGGACcGGGCugcgcuuuuagcucGUCGgUGUCCGCGg -3'
miRNA:   3'- -GGUGUUUGcUUCG--------------CAGCgACAGGUGC- -5'
29618 5' -51.4 NC_006151.1 + 22202 0.69 0.95691
Target:  5'- uCCGCGgggccgacgaagGGCGAggggaccgucgucAGCGUCaGCUG-CCACGa -3'
miRNA:   3'- -GGUGU------------UUGCU-------------UCGCAG-CGACaGGUGC- -5'
29618 5' -51.4 NC_006151.1 + 22825 0.66 0.990865
Target:  5'- -uGCAGggggcGCGAGGCGagcgCGCUGcCCAgGa -3'
miRNA:   3'- ggUGUU-----UGCUUCGCa---GCGACaGGUgC- -5'
29618 5' -51.4 NC_006151.1 + 24664 0.69 0.961007
Target:  5'- aUCACGcACccGGCGUCGCgcaUGUCCAgCGg -3'
miRNA:   3'- -GGUGUuUGcuUCGCAGCG---ACAGGU-GC- -5'
29618 5' -51.4 NC_006151.1 + 26364 0.66 0.99306
Target:  5'- gCCGCGu-CGggGCG-CGC-GUCCcccgGCGg -3'
miRNA:   3'- -GGUGUuuGCuuCGCaGCGaCAGG----UGC- -5'
29618 5' -51.4 NC_006151.1 + 30611 0.67 0.980918
Target:  5'- aCGCGGGCGGucGGCGUgcgCGCUGUgCGgGu -3'
miRNA:   3'- gGUGUUUGCU--UCGCA---GCGACAgGUgC- -5'
29618 5' -51.4 NC_006151.1 + 30894 0.72 0.86475
Target:  5'- gCgGCGAGCGGAGCG-CGCgGUagcgcCCGCGg -3'
miRNA:   3'- -GgUGUUUGCUUCGCaGCGaCA-----GGUGC- -5'
29618 5' -51.4 NC_006151.1 + 37960 0.66 0.989579
Target:  5'- cCCGCGAgcugGCGGAcgccuGCGUC-CUGgccugCCGCGg -3'
miRNA:   3'- -GGUGUU----UGCUU-----CGCAGcGACa----GGUGC- -5'
29618 5' -51.4 NC_006151.1 + 46540 0.66 0.992022
Target:  5'- uCCGCGGACGAccagaggccGGCGcccaggCGCUccCCGCGc -3'
miRNA:   3'- -GGUGUUUGCU---------UCGCa-----GCGAcaGGUGC- -5'
29618 5' -51.4 NC_006151.1 + 46949 0.68 0.970793
Target:  5'- gCCGCGGACuGggGCGacccugUUGCUG-CUGCGg -3'
miRNA:   3'- -GGUGUUUG-CuuCGC------AGCGACaGGUGC- -5'
29618 5' -51.4 NC_006151.1 + 52143 0.69 0.953346
Target:  5'- cCCGCGcACcGAGa--CGCUGUCCACGu -3'
miRNA:   3'- -GGUGUuUGcUUCgcaGCGACAGGUGC- -5'
29618 5' -51.4 NC_006151.1 + 52342 0.69 0.953346
Target:  5'- gCCGCAAA-GAGGuCGUCGUcgucGUCCGCc -3'
miRNA:   3'- -GGUGUUUgCUUC-GCAGCGa---CAGGUGc -5'
29618 5' -51.4 NC_006151.1 + 52764 0.66 0.99306
Target:  5'- cUCGCA-GCGcAGCGcCGCggcGUCCugGu -3'
miRNA:   3'- -GGUGUuUGCuUCGCaGCGa--CAGGugC- -5'
29618 5' -51.4 NC_006151.1 + 52932 0.7 0.929963
Target:  5'- aCCACAAACugcGCGUCGCccgCCACc -3'
miRNA:   3'- -GGUGUUUGcuuCGCAGCGacaGGUGc -5'
29618 5' -51.4 NC_006151.1 + 53067 0.68 0.976249
Target:  5'- aCCACGaagcugucGACGAGGCGcaggUGCUcGUCCgucaGCGg -3'
miRNA:   3'- -GGUGU--------UUGCUUCGCa---GCGA-CAGG----UGC- -5'
29618 5' -51.4 NC_006151.1 + 53331 0.7 0.929963
Target:  5'- aCACAGACGAgcacggGGCGcgCGCgcgCCGCGu -3'
miRNA:   3'- gGUGUUUGCU------UCGCa-GCGacaGGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.