miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29618 5' -51.4 NC_006151.1 + 58453 0.83 0.31916
Target:  5'- gCGCGcGCGcGGCGUCGCgGUCCACGa -3'
miRNA:   3'- gGUGUuUGCuUCGCAGCGaCAGGUGC- -5'
29618 5' -51.4 NC_006151.1 + 69805 0.78 0.563293
Target:  5'- gCACAGGCGcuccAGGCGcUCGCcGUCCACGu -3'
miRNA:   3'- gGUGUUUGC----UUCGC-AGCGaCAGGUGC- -5'
29618 5' -51.4 NC_006151.1 + 18697 0.77 0.604779
Target:  5'- gCGCGGGCGGcgccGGCGUCGUgacgccGUCCACGu -3'
miRNA:   3'- gGUGUUUGCU----UCGCAGCGa-----CAGGUGC- -5'
29618 5' -51.4 NC_006151.1 + 65171 0.76 0.657045
Target:  5'- gCgGCGcGCGAGGCGgaagCGCggGUCCGCGa -3'
miRNA:   3'- -GgUGUuUGCUUCGCa---GCGa-CAGGUGC- -5'
29618 5' -51.4 NC_006151.1 + 73047 0.76 0.667471
Target:  5'- gCGCGGugGggGUG-CGCgggGUCCGCGu -3'
miRNA:   3'- gGUGUUugCuuCGCaGCGa--CAGGUGC- -5'
29618 5' -51.4 NC_006151.1 + 135977 0.75 0.707758
Target:  5'- gCCAUGGACGAGGCGgccaccuUCGCccUCCACGa -3'
miRNA:   3'- -GGUGUUUGCUUCGC-------AGCGacAGGUGC- -5'
29618 5' -51.4 NC_006151.1 + 59785 0.75 0.729066
Target:  5'- gCCACGAgguacuucuccACGAAGguggccaccuCGcCGCUGUCCGCGa -3'
miRNA:   3'- -GGUGUU-----------UGCUUC----------GCaGCGACAGGUGC- -5'
29618 5' -51.4 NC_006151.1 + 76021 0.74 0.778076
Target:  5'- aCACGAGCGcGGCGcaggccaCGCgGUCCGCGa -3'
miRNA:   3'- gGUGUUUGCuUCGCa------GCGaCAGGUGC- -5'
29618 5' -51.4 NC_006151.1 + 112175 0.74 0.787507
Target:  5'- gCCGC-GGCGAAGCGaUCGCg--CCGCGc -3'
miRNA:   3'- -GGUGuUUGCUUCGC-AGCGacaGGUGC- -5'
29618 5' -51.4 NC_006151.1 + 121988 0.73 0.805922
Target:  5'- aCCAUggGCGgcGCGUgcCGCU-UCCACGc -3'
miRNA:   3'- -GGUGuuUGCuuCGCA--GCGAcAGGUGC- -5'
29618 5' -51.4 NC_006151.1 + 88022 0.73 0.814887
Target:  5'- aCGCGGGgGAGGCGUCGUagcgcugcgUGUCCuCGa -3'
miRNA:   3'- gGUGUUUgCUUCGCAGCG---------ACAGGuGC- -5'
29618 5' -51.4 NC_006151.1 + 130836 0.73 0.823679
Target:  5'- gCGCGGcGCGGAGuCGUCGCcGUCgGCGg -3'
miRNA:   3'- gGUGUU-UGCUUC-GCAGCGaCAGgUGC- -5'
29618 5' -51.4 NC_006151.1 + 67273 0.73 0.823679
Target:  5'- uCCACGcGCGccuGCGcCGCUGgugCCGCGa -3'
miRNA:   3'- -GGUGUuUGCuu-CGCaGCGACa--GGUGC- -5'
29618 5' -51.4 NC_006151.1 + 59288 0.73 0.832289
Target:  5'- aCACGAGCGcGGCGUgGC-GcCCGCGg -3'
miRNA:   3'- gGUGUUUGCuUCGCAgCGaCaGGUGC- -5'
29618 5' -51.4 NC_006151.1 + 69318 0.72 0.840709
Target:  5'- gCCACAcgugcGCGGGcGCGUCGCcGcCCGCGa -3'
miRNA:   3'- -GGUGUu----UGCUU-CGCAGCGaCaGGUGC- -5'
29618 5' -51.4 NC_006151.1 + 97565 0.72 0.84893
Target:  5'- gCCGC---CGAGGCGcagcUCGCgGUCCACGu -3'
miRNA:   3'- -GGUGuuuGCUUCGC----AGCGaCAGGUGC- -5'
29618 5' -51.4 NC_006151.1 + 30894 0.72 0.86475
Target:  5'- gCgGCGAGCGGAGCG-CGCgGUagcgcCCGCGg -3'
miRNA:   3'- -GgUGUUUGCUUCGCaGCGaCA-----GGUGC- -5'
29618 5' -51.4 NC_006151.1 + 57231 0.72 0.86475
Target:  5'- gUCGCAGGCGgcGCG-CGCggccucggcGUCCGCGc -3'
miRNA:   3'- -GGUGUUUGCuuCGCaGCGa--------CAGGUGC- -5'
29618 5' -51.4 NC_006151.1 + 19425 0.72 0.872335
Target:  5'- aCCGCuccgggguGACGAugGGCGgcucgCGCUGgagCCGCGg -3'
miRNA:   3'- -GGUGu-------UUGCU--UCGCa----GCGACa--GGUGC- -5'
29618 5' -51.4 NC_006151.1 + 83908 0.71 0.886824
Target:  5'- uCUACGAACGccuGCGcCGCgacccGUCCGCGu -3'
miRNA:   3'- -GGUGUUUGCuu-CGCaGCGa----CAGGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.