miRNA display CGI


Results 21 - 40 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29618 5' -51.4 NC_006151.1 + 95667 0.71 0.893718
Target:  5'- uCCACuuGACGgcGCGcUCGCcGUCCAgGu -3'
miRNA:   3'- -GGUGu-UUGCuuCGC-AGCGaCAGGUgC- -5'
29618 5' -51.4 NC_006151.1 + 128890 0.71 0.893718
Target:  5'- aCCACAgcagcaugacgGugGggGCGUCGCgcucgucGUCCgaGCGc -3'
miRNA:   3'- -GGUGU-----------UugCuuCGCAGCGa------CAGG--UGC- -5'
29618 5' -51.4 NC_006151.1 + 112802 0.71 0.89774
Target:  5'- uUCGCGGGCGc-GCGUCGCUGcagcgcgccuucgCCACGc -3'
miRNA:   3'- -GGUGUUUGCuuCGCAGCGACa------------GGUGC- -5'
29618 5' -51.4 NC_006151.1 + 94587 0.71 0.900374
Target:  5'- uCCACAAAgGggGCG-CG--GUCCGCGc -3'
miRNA:   3'- -GGUGUUUgCuuCGCaGCgaCAGGUGC- -5'
29618 5' -51.4 NC_006151.1 + 121414 0.71 0.906786
Target:  5'- gCGCGGGCGggGaCGUCGCgggGcUCGCGc -3'
miRNA:   3'- gGUGUUUGCuuC-GCAGCGa--CaGGUGC- -5'
29618 5' -51.4 NC_006151.1 + 106393 0.71 0.912953
Target:  5'- cCCGCugcGCGAcgGGCaggCGCUGUUCACGc -3'
miRNA:   3'- -GGUGuu-UGCU--UCGca-GCGACAGGUGC- -5'
29618 5' -51.4 NC_006151.1 + 88525 0.71 0.912953
Target:  5'- uCCGCGAaccaGCGcAGGCGcaCGCUGcgCCGCGg -3'
miRNA:   3'- -GGUGUU----UGC-UUCGCa-GCGACa-GGUGC- -5'
29618 5' -51.4 NC_006151.1 + 88371 0.7 0.918292
Target:  5'- gCGCAGgcucggcGCGAGcGCGUcCGCggcGUCCGCGg -3'
miRNA:   3'- gGUGUU-------UGCUU-CGCA-GCGa--CAGGUGC- -5'
29618 5' -51.4 NC_006151.1 + 93443 0.7 0.918873
Target:  5'- -gGCGAGCGggG-GUCGCcG-CCGCGg -3'
miRNA:   3'- ggUGUUUGCuuCgCAGCGaCaGGUGC- -5'
29618 5' -51.4 NC_006151.1 + 111461 0.7 0.924543
Target:  5'- gCUGCGucuGCGAGGCGUCGUcgggGcCCAUGa -3'
miRNA:   3'- -GGUGUu--UGCUUCGCAGCGa---CaGGUGC- -5'
29618 5' -51.4 NC_006151.1 + 58928 0.7 0.924543
Target:  5'- gCCGCGGcCGucauAGCGcCGCaaaGUCCACGg -3'
miRNA:   3'- -GGUGUUuGCu---UCGCaGCGa--CAGGUGC- -5'
29618 5' -51.4 NC_006151.1 + 53331 0.7 0.929963
Target:  5'- aCACAGACGAgcacggGGCGcgCGCgcgCCGCGu -3'
miRNA:   3'- gGUGUUUGCU------UCGCa-GCGacaGGUGC- -5'
29618 5' -51.4 NC_006151.1 + 107004 0.7 0.929963
Target:  5'- gCCGCAGcUGGAGCGgcucucggCGCUGaUCGCGg -3'
miRNA:   3'- -GGUGUUuGCUUCGCa-------GCGACaGGUGC- -5'
29618 5' -51.4 NC_006151.1 + 57489 0.7 0.929963
Target:  5'- cUCGCAGGCGAcGCGcacgCGCUcggCCGCGg -3'
miRNA:   3'- -GGUGUUUGCUuCGCa---GCGAca-GGUGC- -5'
29618 5' -51.4 NC_006151.1 + 140052 0.7 0.929963
Target:  5'- gCCGCAcgccacCGAGGCGgcgCGCgUGcUCCGCGa -3'
miRNA:   3'- -GGUGUuu----GCUUCGCa--GCG-AC-AGGUGC- -5'
29618 5' -51.4 NC_006151.1 + 52932 0.7 0.929963
Target:  5'- aCCACAAACugcGCGUCGCccgCCACc -3'
miRNA:   3'- -GGUGUUUGcuuCGCAGCGacaGGUGc -5'
29618 5' -51.4 NC_006151.1 + 21163 0.7 0.933609
Target:  5'- gCUACGGACcGGGCugcgcuuuuagcucGUCGgUGUCCGCGg -3'
miRNA:   3'- -GGUGUUUGcUUCG--------------CAGCgACAGGUGC- -5'
29618 5' -51.4 NC_006151.1 + 129600 0.7 0.934628
Target:  5'- uCCGCGAGCGGgcacgugcgcaccAGCGggucgagCGC-GUCCAUGa -3'
miRNA:   3'- -GGUGUUUGCU-------------UCGCa------GCGaCAGGUGC- -5'
29618 5' -51.4 NC_006151.1 + 67529 0.7 0.935134
Target:  5'- gCCAcCAGGCGccagccGGCGUCGUUGaCCACc -3'
miRNA:   3'- -GGU-GUUUGCu-----UCGCAGCGACaGGUGc -5'
29618 5' -51.4 NC_006151.1 + 71590 0.7 0.935134
Target:  5'- uCCGCGGGCGccGCGUCGUcacaccUCCACc -3'
miRNA:   3'- -GGUGUUUGCuuCGCAGCGac----AGGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.