miRNA display CGI


Results 21 - 40 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29618 5' -51.4 NC_006151.1 + 26364 0.66 0.99306
Target:  5'- gCCGCGu-CGggGCG-CGC-GUCCcccgGCGg -3'
miRNA:   3'- -GGUGUuuGCuuCGCaGCGaCAGG----UGC- -5'
29618 5' -51.4 NC_006151.1 + 115038 0.66 0.99306
Target:  5'- gCgGCAGGCGc-GUGUUGCUGUaCGCGu -3'
miRNA:   3'- -GgUGUUUGCuuCGCAGCGACAgGUGC- -5'
29618 5' -51.4 NC_006151.1 + 94910 0.66 0.99306
Target:  5'- gCCACAAACugcGCGUUGUacacgccgUGcUCCGCGa -3'
miRNA:   3'- -GGUGUUUGcuuCGCAGCG--------AC-AGGUGC- -5'
29618 5' -51.4 NC_006151.1 + 52764 0.66 0.99306
Target:  5'- cUCGCA-GCGcAGCGcCGCggcGUCCugGu -3'
miRNA:   3'- -GGUGUuUGCuUCGCaGCGa--CAGGugC- -5'
29618 5' -51.4 NC_006151.1 + 75389 0.66 0.992022
Target:  5'- gCACGGcGCGggGCGggugcgugCGCggGUCCGgGa -3'
miRNA:   3'- gGUGUU-UGCuuCGCa-------GCGa-CAGGUgC- -5'
29618 5' -51.4 NC_006151.1 + 88329 0.66 0.992022
Target:  5'- gCGCu-GCGAGGCcaCGCUGU-CGCGg -3'
miRNA:   3'- gGUGuuUGCUUCGcaGCGACAgGUGC- -5'
29618 5' -51.4 NC_006151.1 + 102013 0.66 0.992022
Target:  5'- cCCGCGAGCccauGGGCuUCGCcGUCCGgGa -3'
miRNA:   3'- -GGUGUUUGc---UUCGcAGCGaCAGGUgC- -5'
29618 5' -51.4 NC_006151.1 + 122655 0.66 0.992022
Target:  5'- aCCugGAGCGGcgcgAGCGcCGCgccgagGUgCGCGc -3'
miRNA:   3'- -GGugUUUGCU----UCGCaGCGa-----CAgGUGC- -5'
29618 5' -51.4 NC_006151.1 + 127329 0.66 0.992022
Target:  5'- uCCGCGGGCGggG-GU-GCUGguaCACGu -3'
miRNA:   3'- -GGUGUUUGCuuCgCAgCGACag-GUGC- -5'
29618 5' -51.4 NC_006151.1 + 129765 0.67 0.982978
Target:  5'- gCGCGAagGCGAcgagGGCGUCGCUc-CCGCc -3'
miRNA:   3'- gGUGUU--UGCU----UCGCAGCGAcaGGUGc -5'
29618 5' -51.4 NC_006151.1 + 104063 0.67 0.982978
Target:  5'- gCGCGGcCGAcGCGgCGCUGcgCCGCGc -3'
miRNA:   3'- gGUGUUuGCUuCGCaGCGACa-GGUGC- -5'
29618 5' -51.4 NC_006151.1 + 3233 0.67 0.983753
Target:  5'- gCCGCAuccaggcggcgcggcGGCGGAGCGggGCg--CCGCGg -3'
miRNA:   3'- -GGUGU---------------UUGCUUCGCagCGacaGGUGC- -5'
29618 5' -51.4 NC_006151.1 + 122603 0.67 0.984865
Target:  5'- uCCACGAACcAGGCGgugCGggcccucgacCUGUUCACGc -3'
miRNA:   3'- -GGUGUUUGcUUCGCa--GC----------GACAGGUGC- -5'
29618 5' -51.4 NC_006151.1 + 56927 0.67 0.984865
Target:  5'- aCACAAauggcgGCGggGCGUCGCcGg-CGCu -3'
miRNA:   3'- gGUGUU------UGCuuCGCAGCGaCagGUGc -5'
29618 5' -51.4 NC_006151.1 + 70091 0.67 0.984865
Target:  5'- gCGCGugggcGGCGAAGgG-CGCgagcggGUCCACGc -3'
miRNA:   3'- gGUGU-----UUGCUUCgCaGCGa-----CAGGUGC- -5'
29618 5' -51.4 NC_006151.1 + 68170 0.67 0.986588
Target:  5'- gCCACcAGCGcguaggcGGCGUCGUUGagcaggaCCACGa -3'
miRNA:   3'- -GGUGuUUGCu------UCGCAGCGACa------GGUGC- -5'
29618 5' -51.4 NC_006151.1 + 89735 0.67 0.986588
Target:  5'- gCCGCGGugGuGGGCGagacgaGCUGguugCCGCGg -3'
miRNA:   3'- -GGUGUUugC-UUCGCag----CGACa---GGUGC- -5'
29618 5' -51.4 NC_006151.1 + 130546 0.67 0.986588
Target:  5'- cCCGC--GCGAgGGCGgcgCGCUGccgccCCACGa -3'
miRNA:   3'- -GGUGuuUGCU-UCGCa--GCGACa----GGUGC- -5'
29618 5' -51.4 NC_006151.1 + 135354 0.67 0.986588
Target:  5'- uCCGCGAGcCGccGCG-CGUUGgCCGCGu -3'
miRNA:   3'- -GGUGUUU-GCuuCGCaGCGACaGGUGC- -5'
29618 5' -51.4 NC_006151.1 + 121698 0.67 0.982978
Target:  5'- gCCAU-GGCGGAGCGgcggcUCGUggcgGUCCugGg -3'
miRNA:   3'- -GGUGuUUGCUUCGC-----AGCGa---CAGGugC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.