Results 1 - 20 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29619 | 5' | -55.8 | NC_006151.1 | + | 131718 | 0.8 | 0.236831 |
Target: 5'- gGGGGAUGAGgugguaggcgGGGUGGcgGGcccGGGCGAg -3' miRNA: 3'- -CCCCUACUCa---------CCUACCuaCC---UCCGCU- -5' |
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29619 | 5' | -55.8 | NC_006151.1 | + | 130871 | 0.7 | 0.693258 |
Target: 5'- cGGGAccgcagUGGGcGGcgGcGGUGGAGGCGGc -3' miRNA: 3'- cCCCU------ACUCaCCuaC-CUACCUCCGCU- -5' |
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29619 | 5' | -55.8 | NC_006151.1 | + | 91681 | 0.67 | 0.886974 |
Target: 5'- cGGGuGGUGcgcGUGGGUGG--GGuGGCGGu -3' miRNA: 3'- -CCC-CUACu--CACCUACCuaCCuCCGCU- -5' |
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29619 | 5' | -55.8 | NC_006151.1 | + | 87769 | 0.68 | 0.832901 |
Target: 5'- cGGGGUGuGGUGGGgcgggagagagugUGGGUGGgagaGGGUGGg -3' miRNA: 3'- cCCCUAC-UCACCU-------------ACCUACC----UCCGCU- -5' |
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29619 | 5' | -55.8 | NC_006151.1 | + | 84391 | 0.66 | 0.89372 |
Target: 5'- cGGGGAcGGGcggGGAgcGGGUGGGcgcGGUGAu -3' miRNA: 3'- -CCCCUaCUCa--CCUa-CCUACCU---CCGCU- -5' |
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29619 | 5' | -55.8 | NC_006151.1 | + | 79162 | 0.68 | 0.8395 |
Target: 5'- aGGGGGUGAGcGagcgggcaugugacGAUGGGUGGAGcUGGu -3' miRNA: 3'- -CCCCUACUCaC--------------CUACCUACCUCcGCU- -5' |
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29619 | 5' | -55.8 | NC_006151.1 | + | 72595 | 0.67 | 0.849963 |
Target: 5'- cGGGGUGAG-GGggGGGgcaGGGCGGa -3' miRNA: 3'- cCCCUACUCaCCuaCCUaccUCCGCU- -5' |
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29619 | 5' | -55.8 | NC_006151.1 | + | 51030 | 0.8 | 0.248549 |
Target: 5'- uGGGGGUGGGauggGGAUGGugacgGUGGuGGCGAu -3' miRNA: 3'- -CCCCUACUCa---CCUACC-----UACCuCCGCU- -5' |
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29619 | 5' | -55.8 | NC_006151.1 | + | 49637 | 0.7 | 0.703322 |
Target: 5'- uGGGGGUGGGcc-GUGGA-GGAGGuCGAg -3' miRNA: 3'- -CCCCUACUCaccUACCUaCCUCC-GCU- -5' |
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29619 | 5' | -55.8 | NC_006151.1 | + | 49537 | 0.77 | 0.367875 |
Target: 5'- gGGGGAgggGGGUgGGAUGGAcGGAGGaGAg -3' miRNA: 3'- -CCCCUa--CUCA-CCUACCUaCCUCCgCU- -5' |
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29619 | 5' | -55.8 | NC_006151.1 | + | 45603 | 0.67 | 0.880003 |
Target: 5'- gGGGGAgccccgacgGGGcGGgcGGAaGGGGGCGu -3' miRNA: 3'- -CCCCUa--------CUCaCCuaCCUaCCUCCGCu -5' |
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29619 | 5' | -55.8 | NC_006151.1 | + | 45319 | 0.7 | 0.703322 |
Target: 5'- cGGGAggcUGGGaGGGUGGcgGUGGAGGaCGGg -3' miRNA: 3'- cCCCU---ACUCaCCUACC--UACCUCC-GCU- -5' |
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29619 | 5' | -55.8 | NC_006151.1 | + | 45146 | 0.69 | 0.790083 |
Target: 5'- aGGGGGUuGGaUGGAcggcUGGAUGGAcGGaCGGg -3' miRNA: 3'- -CCCCUAcUC-ACCU----ACCUACCU-CC-GCU- -5' |
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29619 | 5' | -55.8 | NC_006151.1 | + | 45051 | 0.73 | 0.560861 |
Target: 5'- gGGGGGUGuGgggGGAUGGGacggcUGGAGaGCGc -3' miRNA: 3'- -CCCCUACuCa--CCUACCU-----ACCUC-CGCu -5' |
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29619 | 5' | -55.8 | NC_006151.1 | + | 44842 | 0.66 | 0.906521 |
Target: 5'- cGGGgcGAGcgGGGucgUGGAggGGGGGCGc -3' miRNA: 3'- cCCCuaCUCa-CCU---ACCUa-CCUCCGCu -5' |
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29619 | 5' | -55.8 | NC_006151.1 | + | 44798 | 0.68 | 0.799132 |
Target: 5'- gGGGGGUGAaaggGGGUGcuAUGGGGGUGc -3' miRNA: 3'- -CCCCUACUca--CCUACc-UACCUCCGCu -5' |
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29619 | 5' | -55.8 | NC_006151.1 | + | 44488 | 0.79 | 0.254586 |
Target: 5'- gGGGGGUGGG-GGAUGGuGUGGGguGGCGGu -3' miRNA: 3'- -CCCCUACUCaCCUACC-UACCU--CCGCU- -5' |
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29619 | 5' | -55.8 | NC_006151.1 | + | 43707 | 0.68 | 0.817633 |
Target: 5'- cGGGGA-GAGgaaccgaaaaaucggGGAcGG-UGGGGGCGGg -3' miRNA: 3'- -CCCCUaCUCa--------------CCUaCCuACCUCCGCU- -5' |
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29619 | 5' | -55.8 | NC_006151.1 | + | 42776 | 0.68 | 0.813293 |
Target: 5'- gGGGGGUGGGacgugacugggcgGGGUGGcgGGAcGCGu -3' miRNA: 3'- -CCCCUACUCa------------CCUACCuaCCUcCGCu -5' |
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29619 | 5' | -55.8 | NC_006151.1 | + | 41309 | 0.75 | 0.463659 |
Target: 5'- aGGGGggGGG-GGggGGGUGGuGGUGGu -3' miRNA: 3'- -CCCCuaCUCaCCuaCCUACCuCCGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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