miRNA display CGI


Results 1 - 20 of 69 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29619 5' -55.8 NC_006151.1 + 5041 0.67 0.865403
Target:  5'- cGGGGAggccgcGGcGGA-GGA-GGAGGCGGa -3'
miRNA:   3'- -CCCCUac----UCaCCUaCCUaCCUCCGCU- -5'
29619 5' -55.8 NC_006151.1 + 8042 0.68 0.799132
Target:  5'- cGGGA-GAGagGGAguUGGggGGAGGgGAg -3'
miRNA:   3'- cCCCUaCUCa-CCU--ACCuaCCUCCgCU- -5'
29619 5' -55.8 NC_006151.1 + 8112 0.68 0.838682
Target:  5'- aGGGGggGGGUcGGAgcgcGGAccccgcccgguggGGGGGCGGg -3'
miRNA:   3'- -CCCCuaCUCA-CCUa---CCUa------------CCUCCGCU- -5'
29619 5' -55.8 NC_006151.1 + 8532 0.69 0.790083
Target:  5'- cGGGGA-GAGUGuGAugUGGggGGuGuGCGAg -3'
miRNA:   3'- -CCCCUaCUCAC-CU--ACCuaCCuC-CGCU- -5'
29619 5' -55.8 NC_006151.1 + 8577 0.69 0.784585
Target:  5'- -uGGGUGGGUGGGUGuGAgggccggugcgaguaUGGGGGCc- -3'
miRNA:   3'- ccCCUACUCACCUAC-CU---------------ACCUCCGcu -5'
29619 5' -55.8 NC_006151.1 + 10377 0.71 0.652583
Target:  5'- aGGGGAggGGGUcGGggGGAagGGAGGgGGg -3'
miRNA:   3'- -CCCCUa-CUCA-CCuaCCUa-CCUCCgCU- -5'
29619 5' -55.8 NC_006151.1 + 11738 0.81 0.204436
Target:  5'- cGGGGGUGAGggGGAgGGGUGcGGGCGAg -3'
miRNA:   3'- -CCCCUACUCa-CCUaCCUACcUCCGCU- -5'
29619 5' -55.8 NC_006151.1 + 11805 0.78 0.321668
Target:  5'- aGGGGcgGGGUgGGGUGGggGGcGGCGGc -3'
miRNA:   3'- -CCCCuaCUCA-CCUACCuaCCuCCGCU- -5'
29619 5' -55.8 NC_006151.1 + 12322 0.7 0.690229
Target:  5'- -aGGA-GAGaUGGAUGGAUGGAuugggggaaggaggGGCGGg -3'
miRNA:   3'- ccCCUaCUC-ACCUACCUACCU--------------CCGCU- -5'
29619 5' -55.8 NC_006151.1 + 12415 0.68 0.825338
Target:  5'- aGGGGGcUGGGUGG--GGu--GAGGCGAg -3'
miRNA:   3'- -CCCCU-ACUCACCuaCCuacCUCCGCU- -5'
29619 5' -55.8 NC_006151.1 + 14475 0.73 0.530933
Target:  5'- gGGcGGGUGGGcGGGUGGgcGGGGGuCGGg -3'
miRNA:   3'- -CC-CCUACUCaCCUACCuaCCUCC-GCU- -5'
29619 5' -55.8 NC_006151.1 + 16139 0.72 0.621874
Target:  5'- aGGGAgagggGAGUGGGaugGGGUGGAGaCGGu -3'
miRNA:   3'- cCCCUa----CUCACCUa--CCUACCUCcGCU- -5'
29619 5' -55.8 NC_006151.1 + 16174 0.72 0.621874
Target:  5'- aGGGAgagggGAGUGGGaugGGGUGGAGaCGGu -3'
miRNA:   3'- cCCCUa----CUCACCUa--CCUACCUCcGCU- -5'
29619 5' -55.8 NC_006151.1 + 16209 0.72 0.621874
Target:  5'- aGGGAgagggGAGUGGGaugGGGUGGAGaCGGu -3'
miRNA:   3'- cCCCUa----CUCACCUa--CCUACCUCcGCU- -5'
29619 5' -55.8 NC_006151.1 + 16244 0.72 0.621874
Target:  5'- aGGGAgagggGAGUGGGaugGGGUGGAGaCGGu -3'
miRNA:   3'- cCCCUa----CUCACCUa--CCUACCUCcGCU- -5'
29619 5' -55.8 NC_006151.1 + 16279 0.72 0.621874
Target:  5'- aGGGAgagggGAGUGGGaugGGGUGGAGaCGGu -3'
miRNA:   3'- cCCCUa----CUCACCUa--CCUACCUCcGCU- -5'
29619 5' -55.8 NC_006151.1 + 16314 0.72 0.621874
Target:  5'- aGGGAgagggGAGUGGGaugGGGUGGAGaCGGu -3'
miRNA:   3'- cCCCUa----CUCACCUa--CCUACCUCcGCU- -5'
29619 5' -55.8 NC_006151.1 + 16349 0.72 0.621874
Target:  5'- aGGGAgagggGAGUGGGaugGGGUGGAGaCGGu -3'
miRNA:   3'- cCCCUa----CUCACCUa--CCUACCUCcGCU- -5'
29619 5' -55.8 NC_006151.1 + 16384 0.72 0.621874
Target:  5'- aGGGAgagggGAGUGGGaugGGGUGGAGaCGGu -3'
miRNA:   3'- cCCCUa----CUCACCUa--CCUACCUCcGCU- -5'
29619 5' -55.8 NC_006151.1 + 16419 0.72 0.621874
Target:  5'- aGGGAgagggGAGUGGGaugGGGUGGAGaCGGu -3'
miRNA:   3'- cCCCUa----CUCACCUa--CCUACCUCcGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.