miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29619 5' -55.8 NC_006151.1 + 16454 0.72 0.621874
Target:  5'- aGGGAgagggGAGUGGGaugGGGUGGAGaCGGu -3'
miRNA:   3'- cCCCUa----CUCACCUa--CCUACCUCcGCU- -5'
29619 5' -55.8 NC_006151.1 + 16489 0.72 0.621874
Target:  5'- aGGGAgagggGAGUGGGaugGGGUGGAGaCGGu -3'
miRNA:   3'- cCCCUa----CUCACCUa--CCUACCUCcGCU- -5'
29619 5' -55.8 NC_006151.1 + 16752 0.7 0.713325
Target:  5'- gGGGaGAUGGGggagGGAgagagaGGAcGGAGGCGu -3'
miRNA:   3'- -CCC-CUACUCa---CCUa-----CCUaCCUCCGCu -5'
29619 5' -55.8 NC_006151.1 + 20127 0.67 0.886974
Target:  5'- cGGGGcUGGGgGGcgGGcgccgcGGGGGCGGc -3'
miRNA:   3'- -CCCCuACUCaCCuaCCua----CCUCCGCU- -5'
29619 5' -55.8 NC_006151.1 + 23009 0.75 0.445257
Target:  5'- -cGGGUGGGggcgcggGGGUGG-UGGAGGCGGc -3'
miRNA:   3'- ccCCUACUCa------CCUACCuACCUCCGCU- -5'
29619 5' -55.8 NC_006151.1 + 23433 0.79 0.26702
Target:  5'- gGGGcGAUGGGUGGGaGGGUGGccccgGGGCGGg -3'
miRNA:   3'- -CCC-CUACUCACCUaCCUACC-----UCCGCU- -5'
29619 5' -55.8 NC_006151.1 + 26296 0.77 0.344214
Target:  5'- uGGGGUGGGggGGGUGGggGGAGGaaaGAa -3'
miRNA:   3'- cCCCUACUCa-CCUACCuaCCUCCg--CU- -5'
29619 5' -55.8 NC_006151.1 + 27506 0.81 0.220125
Target:  5'- cGGGGUGGGaggGGGUGcGAUGGGGGCGu -3'
miRNA:   3'- cCCCUACUCa--CCUAC-CUACCUCCGCu -5'
29619 5' -55.8 NC_006151.1 + 27535 0.73 0.570944
Target:  5'- gGGGGggGGGgggGGggGGggGGGGGCu- -3'
miRNA:   3'- -CCCCuaCUCa--CCuaCCuaCCUCCGcu -5'
29619 5' -55.8 NC_006151.1 + 27573 0.72 0.591234
Target:  5'- gGGGGccGGGUGGGUGGGc-GAGGCu- -3'
miRNA:   3'- -CCCCuaCUCACCUACCUacCUCCGcu -5'
29619 5' -55.8 NC_006151.1 + 27646 0.73 0.570944
Target:  5'- uGGGGGUGGcUGGAUGGAUuGGAuggauugaaugGGUGGu -3'
miRNA:   3'- -CCCCUACUcACCUACCUA-CCU-----------CCGCU- -5'
29619 5' -55.8 NC_006151.1 + 27953 0.68 0.841943
Target:  5'- cGGGGUGGGgagGGA-GGggGGAcGGgGAg -3'
miRNA:   3'- cCCCUACUCa--CCUaCCuaCCU-CCgCU- -5'
29619 5' -55.8 NC_006151.1 + 29277 0.69 0.780892
Target:  5'- -cGGGUGAGUcGGGaGGGUGG-GGUGGg -3'
miRNA:   3'- ccCCUACUCA-CCUaCCUACCuCCGCU- -5'
29619 5' -55.8 NC_006151.1 + 29367 0.73 0.560861
Target:  5'- cGGGGAgcgGGGcgGGAUGGggGGAgaggagaggagaGGCGGg -3'
miRNA:   3'- -CCCCUa--CUCa-CCUACCuaCCU------------CCGCU- -5'
29619 5' -55.8 NC_006151.1 + 29625 0.75 0.454408
Target:  5'- uGGGAgGAGUGGG-GGAauUGGGGGUGGg -3'
miRNA:   3'- cCCCUaCUCACCUaCCU--ACCUCCGCU- -5'
29619 5' -55.8 NC_006151.1 + 29660 0.73 0.540849
Target:  5'- gGGGGAgGAGgaaGGggGGG-GGGGGCGGg -3'
miRNA:   3'- -CCCCUaCUCa--CCuaCCUaCCUCCGCU- -5'
29619 5' -55.8 NC_006151.1 + 29804 0.71 0.662798
Target:  5'- aGGGGAgGGGUGG-UGG-UGGuagaGGGCGGu -3'
miRNA:   3'- -CCCCUaCUCACCuACCuACC----UCCGCU- -5'
29619 5' -55.8 NC_006151.1 + 30030 0.66 0.900236
Target:  5'- gGGGGAgGAGgGGggGGA-GGAGugaGCGGg -3'
miRNA:   3'- -CCCCUaCUCaCCuaCCUaCCUC---CGCU- -5'
29619 5' -55.8 NC_006151.1 + 30412 0.69 0.752553
Target:  5'- cGGGGAgaggaagGAGgGGA-GGAcGGAgGGCGAg -3'
miRNA:   3'- -CCCCUa------CUCaCCUaCCUaCCU-CCGCU- -5'
29619 5' -55.8 NC_006151.1 + 30638 0.67 0.865403
Target:  5'- -cGGGUGGGUGGG-GGA-GGGGGuUGAu -3'
miRNA:   3'- ccCCUACUCACCUaCCUaCCUCC-GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.