Results 21 - 40 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29619 | 5' | -55.8 | NC_006151.1 | + | 27535 | 0.73 | 0.570944 |
Target: 5'- gGGGGggGGGgggGGggGGggGGGGGCu- -3' miRNA: 3'- -CCCCuaCUCa--CCuaCCuaCCUCCGcu -5' |
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29619 | 5' | -55.8 | NC_006151.1 | + | 27573 | 0.72 | 0.591234 |
Target: 5'- gGGGGccGGGUGGGUGGGc-GAGGCu- -3' miRNA: 3'- -CCCCuaCUCACCUACCUacCUCCGcu -5' |
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29619 | 5' | -55.8 | NC_006151.1 | + | 16349 | 0.72 | 0.621874 |
Target: 5'- aGGGAgagggGAGUGGGaugGGGUGGAGaCGGu -3' miRNA: 3'- cCCCUa----CUCACCUa--CCUACCUCcGCU- -5' |
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29619 | 5' | -55.8 | NC_006151.1 | + | 16489 | 0.72 | 0.621874 |
Target: 5'- aGGGAgagggGAGUGGGaugGGGUGGAGaCGGu -3' miRNA: 3'- cCCCUa----CUCACCUa--CCUACCUCcGCU- -5' |
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29619 | 5' | -55.8 | NC_006151.1 | + | 16454 | 0.72 | 0.621874 |
Target: 5'- aGGGAgagggGAGUGGGaugGGGUGGAGaCGGu -3' miRNA: 3'- cCCCUa----CUCACCUa--CCUACCUCcGCU- -5' |
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29619 | 5' | -55.8 | NC_006151.1 | + | 16419 | 0.72 | 0.621874 |
Target: 5'- aGGGAgagggGAGUGGGaugGGGUGGAGaCGGu -3' miRNA: 3'- cCCCUa----CUCACCUa--CCUACCUCcGCU- -5' |
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29619 | 5' | -55.8 | NC_006151.1 | + | 16384 | 0.72 | 0.621874 |
Target: 5'- aGGGAgagggGAGUGGGaugGGGUGGAGaCGGu -3' miRNA: 3'- cCCCUa----CUCACCUa--CCUACCUCcGCU- -5' |
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29619 | 5' | -55.8 | NC_006151.1 | + | 16139 | 0.72 | 0.621874 |
Target: 5'- aGGGAgagggGAGUGGGaugGGGUGGAGaCGGu -3' miRNA: 3'- cCCCUa----CUCACCUa--CCUACCUCcGCU- -5' |
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29619 | 5' | -55.8 | NC_006151.1 | + | 16279 | 0.72 | 0.621874 |
Target: 5'- aGGGAgagggGAGUGGGaugGGGUGGAGaCGGu -3' miRNA: 3'- cCCCUa----CUCACCUa--CCUACCUCcGCU- -5' |
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29619 | 5' | -55.8 | NC_006151.1 | + | 16244 | 0.72 | 0.621874 |
Target: 5'- aGGGAgagggGAGUGGGaugGGGUGGAGaCGGu -3' miRNA: 3'- cCCCUa----CUCACCUa--CCUACCUCcGCU- -5' |
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29619 | 5' | -55.8 | NC_006151.1 | + | 16314 | 0.72 | 0.621874 |
Target: 5'- aGGGAgagggGAGUGGGaugGGGUGGAGaCGGu -3' miRNA: 3'- cCCCUa----CUCACCUa--CCUACCUCcGCU- -5' |
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29619 | 5' | -55.8 | NC_006151.1 | + | 16209 | 0.72 | 0.621874 |
Target: 5'- aGGGAgagggGAGUGGGaugGGGUGGAGaCGGu -3' miRNA: 3'- cCCCUa----CUCACCUa--CCUACCUCcGCU- -5' |
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29619 | 5' | -55.8 | NC_006151.1 | + | 16174 | 0.72 | 0.621874 |
Target: 5'- aGGGAgagggGAGUGGGaugGGGUGGAGaCGGu -3' miRNA: 3'- cCCCUa----CUCACCUa--CCUACCUCcGCU- -5' |
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29619 | 5' | -55.8 | NC_006151.1 | + | 34697 | 0.71 | 0.641328 |
Target: 5'- cGGGGGUcucggggucucgcGAGUGGcaGGG-GGAGGCGGu -3' miRNA: 3'- -CCCCUA-------------CUCACCuaCCUaCCUCCGCU- -5' |
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29619 | 5' | -55.8 | NC_006151.1 | + | 33051 | 0.71 | 0.652583 |
Target: 5'- gGGGGAUGcugccgcgGGUGGcAUGaGAcggaGGGGGCGAg -3' miRNA: 3'- -CCCCUAC--------UCACC-UAC-CUa---CCUCCGCU- -5' |
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29619 | 5' | -55.8 | NC_006151.1 | + | 10377 | 0.71 | 0.652583 |
Target: 5'- aGGGGAggGGGUcGGggGGAagGGAGGgGGg -3' miRNA: 3'- -CCCCUa-CUCA-CCuaCCUa-CCUCCgCU- -5' |
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29619 | 5' | -55.8 | NC_006151.1 | + | 29804 | 0.71 | 0.662798 |
Target: 5'- aGGGGAgGGGUGG-UGG-UGGuagaGGGCGGu -3' miRNA: 3'- -CCCCUaCUCACCuACCuACC----UCCGCU- -5' |
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29619 | 5' | -55.8 | NC_006151.1 | + | 12322 | 0.7 | 0.690229 |
Target: 5'- -aGGA-GAGaUGGAUGGAUGGAuugggggaaggaggGGCGGg -3' miRNA: 3'- ccCCUaCUC-ACCUACCUACCU--------------CCGCU- -5' |
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29619 | 5' | -55.8 | NC_006151.1 | + | 130871 | 0.7 | 0.693258 |
Target: 5'- cGGGAccgcagUGGGcGGcgGcGGUGGAGGCGGc -3' miRNA: 3'- cCCCU------ACUCaCCuaC-CUACCUCCGCU- -5' |
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29619 | 5' | -55.8 | NC_006151.1 | + | 45319 | 0.7 | 0.703322 |
Target: 5'- cGGGAggcUGGGaGGGUGGcgGUGGAGGaCGGg -3' miRNA: 3'- cCCCU---ACUCaCCUACC--UACCUCC-GCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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