miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29619 5' -55.8 NC_006151.1 + 8042 0.68 0.799132
Target:  5'- cGGGA-GAGagGGAguUGGggGGAGGgGAg -3'
miRNA:   3'- cCCCUaCUCa-CCU--ACCuaCCUCCgCU- -5'
29619 5' -55.8 NC_006151.1 + 45146 0.69 0.790083
Target:  5'- aGGGGGUuGGaUGGAcggcUGGAUGGAcGGaCGGg -3'
miRNA:   3'- -CCCCUAcUC-ACCU----ACCUACCU-CC-GCU- -5'
29619 5' -55.8 NC_006151.1 + 8532 0.69 0.790083
Target:  5'- cGGGGA-GAGUGuGAugUGGggGGuGuGCGAg -3'
miRNA:   3'- -CCCCUaCUCAC-CU--ACCuaCCuC-CGCU- -5'
29619 5' -55.8 NC_006151.1 + 8577 0.69 0.784585
Target:  5'- -uGGGUGGGUGGGUGuGAgggccggugcgaguaUGGGGGCc- -3'
miRNA:   3'- ccCCUACUCACCUAC-CU---------------ACCUCCGcu -5'
29619 5' -55.8 NC_006151.1 + 41041 0.69 0.784585
Target:  5'- uGGGGAUGuuggggguccuugauGGUGGuggugGUGGuggugGGAGGUGGa -3'
miRNA:   3'- -CCCCUAC---------------UCACC-----UACCua---CCUCCGCU- -5'
29619 5' -55.8 NC_006151.1 + 29277 0.69 0.780892
Target:  5'- -cGGGUGAGUcGGGaGGGUGG-GGUGGg -3'
miRNA:   3'- ccCCUACUCA-CCUaCCUACCuCCGCU- -5'
29619 5' -55.8 NC_006151.1 + 30412 0.69 0.752553
Target:  5'- cGGGGAgaggaagGAGgGGA-GGAcGGAgGGCGAg -3'
miRNA:   3'- -CCCCUa------CUCaCCUaCCUaCCU-CCGCU- -5'
29619 5' -55.8 NC_006151.1 + 16752 0.7 0.713325
Target:  5'- gGGGaGAUGGGggagGGAgagagaGGAcGGAGGCGu -3'
miRNA:   3'- -CCC-CUACUCa---CCUa-----CCUaCCUCCGCu -5'
29619 5' -55.8 NC_006151.1 + 49637 0.7 0.703322
Target:  5'- uGGGGGUGGGcc-GUGGA-GGAGGuCGAg -3'
miRNA:   3'- -CCCCUACUCaccUACCUaCCUCC-GCU- -5'
29619 5' -55.8 NC_006151.1 + 45319 0.7 0.703322
Target:  5'- cGGGAggcUGGGaGGGUGGcgGUGGAGGaCGGg -3'
miRNA:   3'- cCCCU---ACUCaCCUACC--UACCUCC-GCU- -5'
29619 5' -55.8 NC_006151.1 + 130871 0.7 0.693258
Target:  5'- cGGGAccgcagUGGGcGGcgGcGGUGGAGGCGGc -3'
miRNA:   3'- cCCCU------ACUCaCCuaC-CUACCUCCGCU- -5'
29619 5' -55.8 NC_006151.1 + 12322 0.7 0.690229
Target:  5'- -aGGA-GAGaUGGAUGGAUGGAuugggggaaggaggGGCGGg -3'
miRNA:   3'- ccCCUaCUC-ACCUACCUACCU--------------CCGCU- -5'
29619 5' -55.8 NC_006151.1 + 29804 0.71 0.662798
Target:  5'- aGGGGAgGGGUGG-UGG-UGGuagaGGGCGGu -3'
miRNA:   3'- -CCCCUaCUCACCuACCuACC----UCCGCU- -5'
29619 5' -55.8 NC_006151.1 + 10377 0.71 0.652583
Target:  5'- aGGGGAggGGGUcGGggGGAagGGAGGgGGg -3'
miRNA:   3'- -CCCCUa-CUCA-CCuaCCUa-CCUCCgCU- -5'
29619 5' -55.8 NC_006151.1 + 33051 0.71 0.652583
Target:  5'- gGGGGAUGcugccgcgGGUGGcAUGaGAcggaGGGGGCGAg -3'
miRNA:   3'- -CCCCUAC--------UCACC-UAC-CUa---CCUCCGCU- -5'
29619 5' -55.8 NC_006151.1 + 34697 0.71 0.641328
Target:  5'- cGGGGGUcucggggucucgcGAGUGGcaGGG-GGAGGCGGu -3'
miRNA:   3'- -CCCCUA-------------CUCACCuaCCUaCCUCCGCU- -5'
29619 5' -55.8 NC_006151.1 + 16384 0.72 0.621874
Target:  5'- aGGGAgagggGAGUGGGaugGGGUGGAGaCGGu -3'
miRNA:   3'- cCCCUa----CUCACCUa--CCUACCUCcGCU- -5'
29619 5' -55.8 NC_006151.1 + 16419 0.72 0.621874
Target:  5'- aGGGAgagggGAGUGGGaugGGGUGGAGaCGGu -3'
miRNA:   3'- cCCCUa----CUCACCUa--CCUACCUCcGCU- -5'
29619 5' -55.8 NC_006151.1 + 16454 0.72 0.621874
Target:  5'- aGGGAgagggGAGUGGGaugGGGUGGAGaCGGu -3'
miRNA:   3'- cCCCUa----CUCACCUa--CCUACCUCcGCU- -5'
29619 5' -55.8 NC_006151.1 + 16349 0.72 0.621874
Target:  5'- aGGGAgagggGAGUGGGaugGGGUGGAGaCGGu -3'
miRNA:   3'- cCCCUa----CUCACCUa--CCUACCUCcGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.