miRNA display CGI


Results 41 - 60 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29619 5' -55.8 NC_006151.1 + 16279 0.72 0.621874
Target:  5'- aGGGAgagggGAGUGGGaugGGGUGGAGaCGGu -3'
miRNA:   3'- cCCCUa----CUCACCUa--CCUACCUCcGCU- -5'
29619 5' -55.8 NC_006151.1 + 16314 0.72 0.621874
Target:  5'- aGGGAgagggGAGUGGGaugGGGUGGAGaCGGu -3'
miRNA:   3'- cCCCUa----CUCACCUa--CCUACCUCcGCU- -5'
29619 5' -55.8 NC_006151.1 + 16349 0.72 0.621874
Target:  5'- aGGGAgagggGAGUGGGaugGGGUGGAGaCGGu -3'
miRNA:   3'- cCCCUa----CUCACCUa--CCUACCUCcGCU- -5'
29619 5' -55.8 NC_006151.1 + 16384 0.72 0.621874
Target:  5'- aGGGAgagggGAGUGGGaugGGGUGGAGaCGGu -3'
miRNA:   3'- cCCCUa----CUCACCUa--CCUACCUCcGCU- -5'
29619 5' -55.8 NC_006151.1 + 16419 0.72 0.621874
Target:  5'- aGGGAgagggGAGUGGGaugGGGUGGAGaCGGu -3'
miRNA:   3'- cCCCUa----CUCACCUa--CCUACCUCcGCU- -5'
29619 5' -55.8 NC_006151.1 + 16454 0.72 0.621874
Target:  5'- aGGGAgagggGAGUGGGaugGGGUGGAGaCGGu -3'
miRNA:   3'- cCCCUa----CUCACCUa--CCUACCUCcGCU- -5'
29619 5' -55.8 NC_006151.1 + 16489 0.72 0.621874
Target:  5'- aGGGAgagggGAGUGGGaugGGGUGGAGaCGGu -3'
miRNA:   3'- cCCCUa----CUCACCUa--CCUACCUCcGCU- -5'
29619 5' -55.8 NC_006151.1 + 27573 0.72 0.591234
Target:  5'- gGGGGccGGGUGGGUGGGc-GAGGCu- -3'
miRNA:   3'- -CCCCuaCUCACCUACCUacCUCCGcu -5'
29619 5' -55.8 NC_006151.1 + 27535 0.73 0.570944
Target:  5'- gGGGGggGGGgggGGggGGggGGGGGCu- -3'
miRNA:   3'- -CCCCuaCUCa--CCuaCCuaCCUCCGcu -5'
29619 5' -55.8 NC_006151.1 + 27646 0.73 0.570944
Target:  5'- uGGGGGUGGcUGGAUGGAUuGGAuggauugaaugGGUGGu -3'
miRNA:   3'- -CCCCUACUcACCUACCUA-CCU-----------CCGCU- -5'
29619 5' -55.8 NC_006151.1 + 45051 0.73 0.560861
Target:  5'- gGGGGGUGuGgggGGAUGGGacggcUGGAGaGCGc -3'
miRNA:   3'- -CCCCUACuCa--CCUACCU-----ACCUC-CGCu -5'
29619 5' -55.8 NC_006151.1 + 29367 0.73 0.560861
Target:  5'- cGGGGAgcgGGGcgGGAUGGggGGAgaggagaggagaGGCGGg -3'
miRNA:   3'- -CCCCUa--CUCa-CCUACCuaCCU------------CCGCU- -5'
29619 5' -55.8 NC_006151.1 + 33255 0.73 0.560861
Target:  5'- gGGGGAaGGGUGGGgcGGUGGcGGCGGc -3'
miRNA:   3'- -CCCCUaCUCACCUacCUACCuCCGCU- -5'
29619 5' -55.8 NC_006151.1 + 29660 0.73 0.540849
Target:  5'- gGGGGAgGAGgaaGGggGGG-GGGGGCGGg -3'
miRNA:   3'- -CCCCUaCUCa--CCuaCCUaCCUCCGCU- -5'
29619 5' -55.8 NC_006151.1 + 40790 0.73 0.530933
Target:  5'- uGGGGUGgaGGUGGucuuGUGGAUGGGGGUc- -3'
miRNA:   3'- cCCCUAC--UCACC----UACCUACCUCCGcu -5'
29619 5' -55.8 NC_006151.1 + 14475 0.73 0.530933
Target:  5'- gGGcGGGUGGGcGGGUGGgcGGGGGuCGGg -3'
miRNA:   3'- -CC-CCUACUCaCCUACCuaCCUCC-GCU- -5'
29619 5' -55.8 NC_006151.1 + 34398 0.74 0.482452
Target:  5'- aGGGGUGGG-GGAgaggaggGGGUGGguGGGCGAc -3'
miRNA:   3'- cCCCUACUCaCCUa------CCUACC--UCCGCU- -5'
29619 5' -55.8 NC_006151.1 + 41309 0.75 0.463659
Target:  5'- aGGGGggGGG-GGggGGGUGGuGGUGGu -3'
miRNA:   3'- -CCCCuaCUCaCCuaCCUACCuCCGCU- -5'
29619 5' -55.8 NC_006151.1 + 29625 0.75 0.454408
Target:  5'- uGGGAgGAGUGGG-GGAauUGGGGGUGGg -3'
miRNA:   3'- cCCCUaCUCACCUaCCU--ACCUCCGCU- -5'
29619 5' -55.8 NC_006151.1 + 23009 0.75 0.445257
Target:  5'- -cGGGUGGGggcgcggGGGUGG-UGGAGGCGGc -3'
miRNA:   3'- ccCCUACUCa------CCUACCuACCUCCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.