miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29620 3' -55.3 NC_006151.1 + 41493 0.66 0.940751
Target:  5'- cGCGuggcgCGAGGGGAgccaaUGGGGcGGGcGCc -3'
miRNA:   3'- -CGCua---GCUCCUCUac---ACCUC-CCCaCG- -5'
29620 3' -55.3 NC_006151.1 + 3852 0.66 0.940751
Target:  5'- -gGAgcCGGGGAGGcc-GGAGGGG-GCg -3'
miRNA:   3'- cgCUa-GCUCCUCUacaCCUCCCCaCG- -5'
29620 3' -55.3 NC_006151.1 + 8096 0.66 0.935978
Target:  5'- gGCGuggcaGAGGGGGaGgGGGGGGGUcggaGCg -3'
miRNA:   3'- -CGCuag--CUCCUCUaCaCCUCCCCA----CG- -5'
29620 3' -55.3 NC_006151.1 + 73020 0.66 0.935978
Target:  5'- cGCug-CGAGGcccagggauuGGcgGUGGcgcgguGGGGGUGCg -3'
miRNA:   3'- -CGcuaGCUCC----------UCuaCACC------UCCCCACG- -5'
29620 3' -55.3 NC_006151.1 + 31653 0.66 0.925719
Target:  5'- gGCGcgCGGGGAGGga-GGAGGGcGgaggaaggGCc -3'
miRNA:   3'- -CGCuaGCUCCUCUacaCCUCCC-Ca-------CG- -5'
29620 3' -55.3 NC_006151.1 + 29443 0.66 0.920232
Target:  5'- gGCGG-CGGGGAGAggGgacgcggagGGAGcGGGcGCg -3'
miRNA:   3'- -CGCUaGCUCCUCUa-Ca--------CCUC-CCCaCG- -5'
29620 3' -55.3 NC_006151.1 + 142549 0.66 0.920232
Target:  5'- gGgGAaCGAGGGGGU-UGGGGGGaagGCg -3'
miRNA:   3'- -CgCUaGCUCCUCUAcACCUCCCca-CG- -5'
29620 3' -55.3 NC_006151.1 + 27312 0.66 0.914506
Target:  5'- gGgGGUCGAGGcGGggGacGGGGGGcUGCu -3'
miRNA:   3'- -CgCUAGCUCC-UCuaCacCUCCCC-ACG- -5'
29620 3' -55.3 NC_006151.1 + 29279 0.67 0.908543
Target:  5'- gGUGAgUCG-GGAGG-GUGGGGuGGGaGCg -3'
miRNA:   3'- -CGCU-AGCuCCUCUaCACCUC-CCCaCG- -5'
29620 3' -55.3 NC_006151.1 + 29659 0.67 0.902345
Target:  5'- -gGGggGAGGAGGaagGGGGGGGgggGCg -3'
miRNA:   3'- cgCUagCUCCUCUacaCCUCCCCa--CG- -5'
29620 3' -55.3 NC_006151.1 + 30279 0.67 0.902345
Target:  5'- aGCGGcgCGGGGGGAggguguguaugUGUGGuGGuGUGUg -3'
miRNA:   3'- -CGCUa-GCUCCUCU-----------ACACCuCCcCACG- -5'
29620 3' -55.3 NC_006151.1 + 44525 0.67 0.902345
Target:  5'- cGCGggCGAGaaGAgcGAUGUGGuGGuGGUGg -3'
miRNA:   3'- -CGCuaGCUC--CU--CUACACCuCC-CCACg -5'
29620 3' -55.3 NC_006151.1 + 76675 0.67 0.901713
Target:  5'- cGCGGUCGcuggggagcagggGGGAGA-GUGGcGcGGGcGCg -3'
miRNA:   3'- -CGCUAGC-------------UCCUCUaCACCuC-CCCaCG- -5'
29620 3' -55.3 NC_006151.1 + 16272 0.67 0.895915
Target:  5'- aCGGUgGAgGGAGAggggaGUGGGauGGGGUGg -3'
miRNA:   3'- cGCUAgCU-CCUCUa----CACCU--CCCCACg -5'
29620 3' -55.3 NC_006151.1 + 16307 0.67 0.895915
Target:  5'- aCGGUgGAgGGAGAggggaGUGGGauGGGGUGg -3'
miRNA:   3'- cGCUAgCU-CCUCUa----CACCU--CCCCACg -5'
29620 3' -55.3 NC_006151.1 + 16342 0.67 0.895915
Target:  5'- aCGGUgGAgGGAGAggggaGUGGGauGGGGUGg -3'
miRNA:   3'- cGCUAgCU-CCUCUa----CACCU--CCCCACg -5'
29620 3' -55.3 NC_006151.1 + 16377 0.67 0.895915
Target:  5'- aCGGUgGAgGGAGAggggaGUGGGauGGGGUGg -3'
miRNA:   3'- cGCUAgCU-CCUCUa----CACCU--CCCCACg -5'
29620 3' -55.3 NC_006151.1 + 16412 0.67 0.895915
Target:  5'- aCGGUgGAgGGAGAggggaGUGGGauGGGGUGg -3'
miRNA:   3'- cGCUAgCU-CCUCUa----CACCU--CCCCACg -5'
29620 3' -55.3 NC_006151.1 + 16447 0.67 0.895915
Target:  5'- aCGGUgGAgGGAGAggggaGUGGGauGGGGUGg -3'
miRNA:   3'- cGCUAgCU-CCUCUa----CACCU--CCCCACg -5'
29620 3' -55.3 NC_006151.1 + 16237 0.67 0.895915
Target:  5'- aCGGUgGAgGGAGAggggaGUGGGauGGGGUGg -3'
miRNA:   3'- cGCUAgCU-CCUCUa----CACCU--CCCCACg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.