miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29620 3' -55.3 NC_006151.1 + 1962 0.71 0.686859
Target:  5'- ---cUCGAGGAGccgGUGGAGGGGc-- -3'
miRNA:   3'- cgcuAGCUCCUCua-CACCUCCCCacg -5'
29620 3' -55.3 NC_006151.1 + 3852 0.66 0.940751
Target:  5'- -gGAgcCGGGGAGGcc-GGAGGGG-GCg -3'
miRNA:   3'- cgCUa-GCUCCUCUacaCCUCCCCaCG- -5'
29620 3' -55.3 NC_006151.1 + 5841 0.67 0.87526
Target:  5'- -aGGcCGGGGAGGcUGcGGAGGGGgacgaGCg -3'
miRNA:   3'- cgCUaGCUCCUCU-ACaCCUCCCCa----CG- -5'
29620 3' -55.3 NC_006151.1 + 8096 0.66 0.935978
Target:  5'- gGCGuggcaGAGGGGGaGgGGGGGGGUcggaGCg -3'
miRNA:   3'- -CGCuag--CUCCUCUaCaCCUCCCCA----CG- -5'
29620 3' -55.3 NC_006151.1 + 8526 0.83 0.177991
Target:  5'- uGUGcgCGGGGAGAgugugaUGUGGGGGGuGUGCg -3'
miRNA:   3'- -CGCuaGCUCCUCU------ACACCUCCC-CACG- -5'
29620 3' -55.3 NC_006151.1 + 9625 0.67 0.882368
Target:  5'- gGCGG-CGAGGGGGgaagcgGGAGGGaGagGCg -3'
miRNA:   3'- -CGCUaGCUCCUCUaca---CCUCCC-Ca-CG- -5'
29620 3' -55.3 NC_006151.1 + 10357 0.68 0.860398
Target:  5'- cGCGGgaGGGGAGggGagGGAGGGGa-- -3'
miRNA:   3'- -CGCUagCUCCUCuaCa-CCUCCCCacg -5'
29620 3' -55.3 NC_006151.1 + 10383 0.74 0.515117
Target:  5'- gGgGGUCGGGGGGAaGggagGGGGGGGgagaGCg -3'
miRNA:   3'- -CgCUAGCUCCUCUaCa---CCUCCCCa---CG- -5'
29620 3' -55.3 NC_006151.1 + 11727 0.75 0.458089
Target:  5'- -aGAggGGGGAGcgGgggugagggGGAGGGGUGCg -3'
miRNA:   3'- cgCUagCUCCUCuaCa--------CCUCCCCACG- -5'
29620 3' -55.3 NC_006151.1 + 11799 0.72 0.635941
Target:  5'- gGCGAgaggggCGGGGuGggGUGGGGGGcGgcgGCg -3'
miRNA:   3'- -CGCUa-----GCUCCuCuaCACCUCCC-Ca--CG- -5'
29620 3' -55.3 NC_006151.1 + 14505 0.69 0.811093
Target:  5'- aGgGAUCG-GGGGAaGgGGGGGGGUcGUg -3'
miRNA:   3'- -CgCUAGCuCCUCUaCaCCUCCCCA-CG- -5'
29620 3' -55.3 NC_006151.1 + 16132 0.67 0.895915
Target:  5'- aCGGUgGAgGGAGAggggaGUGGGauGGGGUGg -3'
miRNA:   3'- cGCUAgCU-CCUCUa----CACCU--CCCCACg -5'
29620 3' -55.3 NC_006151.1 + 16167 0.67 0.895915
Target:  5'- aCGGUgGAgGGAGAggggaGUGGGauGGGGUGg -3'
miRNA:   3'- cGCUAgCU-CCUCUa----CACCU--CCCCACg -5'
29620 3' -55.3 NC_006151.1 + 16202 0.67 0.895915
Target:  5'- aCGGUgGAgGGAGAggggaGUGGGauGGGGUGg -3'
miRNA:   3'- cGCUAgCU-CCUCUa----CACCU--CCCCACg -5'
29620 3' -55.3 NC_006151.1 + 16237 0.67 0.895915
Target:  5'- aCGGUgGAgGGAGAggggaGUGGGauGGGGUGg -3'
miRNA:   3'- cGCUAgCU-CCUCUa----CACCU--CCCCACg -5'
29620 3' -55.3 NC_006151.1 + 16272 0.67 0.895915
Target:  5'- aCGGUgGAgGGAGAggggaGUGGGauGGGGUGg -3'
miRNA:   3'- cGCUAgCU-CCUCUa----CACCU--CCCCACg -5'
29620 3' -55.3 NC_006151.1 + 16307 0.67 0.895915
Target:  5'- aCGGUgGAgGGAGAggggaGUGGGauGGGGUGg -3'
miRNA:   3'- cGCUAgCU-CCUCUa----CACCU--CCCCACg -5'
29620 3' -55.3 NC_006151.1 + 16342 0.67 0.895915
Target:  5'- aCGGUgGAgGGAGAggggaGUGGGauGGGGUGg -3'
miRNA:   3'- cGCUAgCU-CCUCUa----CACCU--CCCCACg -5'
29620 3' -55.3 NC_006151.1 + 16377 0.67 0.895915
Target:  5'- aCGGUgGAgGGAGAggggaGUGGGauGGGGUGg -3'
miRNA:   3'- cGCUAgCU-CCUCUa----CACCU--CCCCACg -5'
29620 3' -55.3 NC_006151.1 + 16412 0.67 0.895915
Target:  5'- aCGGUgGAgGGAGAggggaGUGGGauGGGGUGg -3'
miRNA:   3'- cGCUAgCU-CCUCUa----CACCU--CCCCACg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.