miRNA display CGI


Results 21 - 40 of 71 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29620 3' -55.3 NC_006151.1 + 16447 0.67 0.895915
Target:  5'- aCGGUgGAgGGAGAggggaGUGGGauGGGGUGg -3'
miRNA:   3'- cGCUAgCU-CCUCUa----CACCU--CCCCACg -5'
29620 3' -55.3 NC_006151.1 + 16482 0.67 0.895915
Target:  5'- aCGGUgGAgGGAGAggggaGUGGGauGGGGUGg -3'
miRNA:   3'- cGCUAgCU-CCUCUa----CACCU--CCCCACg -5'
29620 3' -55.3 NC_006151.1 + 26287 0.71 0.686859
Target:  5'- gGCGGaCGGuGGGGUG-GGGGGGGUGg -3'
miRNA:   3'- -CGCUaGCUcCUCUACaCCUCCCCACg -5'
29620 3' -55.3 NC_006151.1 + 27312 0.66 0.914506
Target:  5'- gGgGGUCGAGGcGGggGacGGGGGGcUGCu -3'
miRNA:   3'- -CgCUAGCUCC-UCuaCacCUCCCC-ACG- -5'
29620 3' -55.3 NC_006151.1 + 27471 0.76 0.448911
Target:  5'- gGCGGUCGAGcGGGggGUcGGcGGGGUGg -3'
miRNA:   3'- -CGCUAGCUC-CUCuaCA-CCuCCCCACg -5'
29620 3' -55.3 NC_006151.1 + 27532 0.7 0.755979
Target:  5'- cGUGGggGGGGGGggGgggGGGGGGGggGCu -3'
miRNA:   3'- -CGCUagCUCCUCuaCa--CCUCCCCa-CG- -5'
29620 3' -55.3 NC_006151.1 + 27944 0.67 0.87526
Target:  5'- cCGAUCGcGcGGGGUGgggagGGAGGGGg-- -3'
miRNA:   3'- cGCUAGCuC-CUCUACa----CCUCCCCacg -5'
29620 3' -55.3 NC_006151.1 + 29279 0.67 0.908543
Target:  5'- gGUGAgUCG-GGAGG-GUGGGGuGGGaGCg -3'
miRNA:   3'- -CGCU-AGCuCCUCUaCACCUC-CCCaCG- -5'
29620 3' -55.3 NC_006151.1 + 29338 0.68 0.867935
Target:  5'- gGCGGgagaGAGGGGggGgGGAGaGGGgGCg -3'
miRNA:   3'- -CGCUag--CUCCUCuaCaCCUC-CCCaCG- -5'
29620 3' -55.3 NC_006151.1 + 29443 0.66 0.920232
Target:  5'- gGCGG-CGGGGAGAggGgacgcggagGGAGcGGGcGCg -3'
miRNA:   3'- -CGCUaGCUCCUCUa-Ca--------CCUC-CCCaCG- -5'
29620 3' -55.3 NC_006151.1 + 29659 0.67 0.902345
Target:  5'- -gGGggGAGGAGGaagGGGGGGGgggGCg -3'
miRNA:   3'- cgCUagCUCCUCUacaCCUCCCCa--CG- -5'
29620 3' -55.3 NC_006151.1 + 29787 0.71 0.676731
Target:  5'- -aGAgagaGAGGAGAgGgaggGGAGGGGUGg -3'
miRNA:   3'- cgCUag--CUCCUCUaCa---CCUCCCCACg -5'
29620 3' -55.3 NC_006151.1 + 30279 0.67 0.902345
Target:  5'- aGCGGcgCGGGGGGAggguguguaugUGUGGuGGuGUGUg -3'
miRNA:   3'- -CGCUa-GCUCCUCU-----------ACACCuCCcCACG- -5'
29620 3' -55.3 NC_006151.1 + 30402 0.7 0.746359
Target:  5'- cGCGAgucgaCGGGGAGAggaaGGAGGGGa-- -3'
miRNA:   3'- -CGCUa----GCUCCUCUaca-CCUCCCCacg -5'
29620 3' -55.3 NC_006151.1 + 30616 0.68 0.847914
Target:  5'- gGCGGUCGgcgugcgcgcugugcGGGuGGGUGggGGAGGGGguugaugGCc -3'
miRNA:   3'- -CGCUAGC---------------UCC-UCUACa-CCUCCCCa------CG- -5'
29620 3' -55.3 NC_006151.1 + 30692 0.73 0.605287
Target:  5'- gGCGggCGGGGGGGUGUcGGGGccGGGUucGCu -3'
miRNA:   3'- -CGCuaGCUCCUCUACA-CCUC--CCCA--CG- -5'
29620 3' -55.3 NC_006151.1 + 31411 0.69 0.793278
Target:  5'- gGCGAggggaaGGGGaAGggGggGGAcGGGGUGCg -3'
miRNA:   3'- -CGCUag----CUCC-UCuaCa-CCU-CCCCACG- -5'
29620 3' -55.3 NC_006151.1 + 31653 0.66 0.925719
Target:  5'- gGCGcgCGGGGAGGga-GGAGGGcGgaggaaggGCc -3'
miRNA:   3'- -CGCuaGCUCCUCUacaCCUCCC-Ca-------CG- -5'
29620 3' -55.3 NC_006151.1 + 33082 0.69 0.784149
Target:  5'- aGgGggCGAGGgcgGGcgGUGGAGGGGg-- -3'
miRNA:   3'- -CgCuaGCUCC---UCuaCACCUCCCCacg -5'
29620 3' -55.3 NC_006151.1 + 33160 0.72 0.622649
Target:  5'- gGCgGGUCGggggcggggaggaaGGGAGGUGUGGGGGGaugGCc -3'
miRNA:   3'- -CG-CUAGC--------------UCCUCUACACCUCCCca-CG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.