miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29620 3' -55.3 NC_006151.1 + 16307 0.67 0.895915
Target:  5'- aCGGUgGAgGGAGAggggaGUGGGauGGGGUGg -3'
miRNA:   3'- cGCUAgCU-CCUCUa----CACCU--CCCCACg -5'
29620 3' -55.3 NC_006151.1 + 29279 0.67 0.908543
Target:  5'- gGUGAgUCG-GGAGG-GUGGGGuGGGaGCg -3'
miRNA:   3'- -CGCU-AGCuCCUCUaCACCUC-CCCaCG- -5'
29620 3' -55.3 NC_006151.1 + 44525 0.67 0.902345
Target:  5'- cGCGggCGAGaaGAgcGAUGUGGuGGuGGUGg -3'
miRNA:   3'- -CGCuaGCUC--CU--CUACACCuCC-CCACg -5'
29620 3' -55.3 NC_006151.1 + 30279 0.67 0.902345
Target:  5'- aGCGGcgCGGGGGGAggguguguaugUGUGGuGGuGUGUg -3'
miRNA:   3'- -CGCUa-GCUCCUCU-----------ACACCuCCcCACG- -5'
29620 3' -55.3 NC_006151.1 + 29659 0.67 0.902345
Target:  5'- -gGGggGAGGAGGaagGGGGGGGgggGCg -3'
miRNA:   3'- cgCUagCUCCUCUacaCCUCCCCa--CG- -5'
29620 3' -55.3 NC_006151.1 + 76675 0.67 0.901713
Target:  5'- cGCGGUCGcuggggagcagggGGGAGA-GUGGcGcGGGcGCg -3'
miRNA:   3'- -CGCUAGC-------------UCCUCUaCACCuC-CCCaCG- -5'
29620 3' -55.3 NC_006151.1 + 16482 0.67 0.895915
Target:  5'- aCGGUgGAgGGAGAggggaGUGGGauGGGGUGg -3'
miRNA:   3'- cGCUAgCU-CCUCUa----CACCU--CCCCACg -5'
29620 3' -55.3 NC_006151.1 + 16447 0.67 0.895915
Target:  5'- aCGGUgGAgGGAGAggggaGUGGGauGGGGUGg -3'
miRNA:   3'- cGCUAgCU-CCUCUa----CACCU--CCCCACg -5'
29620 3' -55.3 NC_006151.1 + 16412 0.67 0.895915
Target:  5'- aCGGUgGAgGGAGAggggaGUGGGauGGGGUGg -3'
miRNA:   3'- cGCUAgCU-CCUCUa----CACCU--CCCCACg -5'
29620 3' -55.3 NC_006151.1 + 16377 0.67 0.895915
Target:  5'- aCGGUgGAgGGAGAggggaGUGGGauGGGGUGg -3'
miRNA:   3'- cGCUAgCU-CCUCUa----CACCU--CCCCACg -5'
29620 3' -55.3 NC_006151.1 + 16342 0.67 0.895915
Target:  5'- aCGGUgGAgGGAGAggggaGUGGGauGGGGUGg -3'
miRNA:   3'- cGCUAgCU-CCUCUa----CACCU--CCCCACg -5'
29620 3' -55.3 NC_006151.1 + 110381 0.68 0.83658
Target:  5'- -aGAUCGGGGGGAauUGGGGGGa--- -3'
miRNA:   3'- cgCUAGCUCCUCUacACCUCCCcacg -5'
29620 3' -55.3 NC_006151.1 + 142007 0.68 0.844714
Target:  5'- cGCGGcgUGGGGcGGGUGUGGcaccacGuGGGUGCa -3'
miRNA:   3'- -CGCUa-GCUCC-UCUACACCu-----C-CCCACG- -5'
29620 3' -55.3 NC_006151.1 + 30616 0.68 0.847914
Target:  5'- gGCGGUCGgcgugcgcgcugugcGGGuGGGUGggGGAGGGGguugaugGCc -3'
miRNA:   3'- -CGCUAGC---------------UCC-UCUACa-CCUCCCCa------CG- -5'
29620 3' -55.3 NC_006151.1 + 72580 0.68 0.852656
Target:  5'- gGCGGgugacagagUCGGGGuGAg--GGGGGGG-GCa -3'
miRNA:   3'- -CGCU---------AGCUCCuCUacaCCUCCCCaCG- -5'
29620 3' -55.3 NC_006151.1 + 34398 0.68 0.860398
Target:  5'- aGgGGUgGGGGAGAggagGGGGuGGGUGg -3'
miRNA:   3'- -CgCUAgCUCCUCUaca-CCUC-CCCACg -5'
29620 3' -55.3 NC_006151.1 + 10357 0.68 0.860398
Target:  5'- cGCGGgaGGGGAGggGagGGAGGGGa-- -3'
miRNA:   3'- -CGCUagCUCCUCuaCa-CCUCCCCacg -5'
29620 3' -55.3 NC_006151.1 + 44394 0.68 0.860398
Target:  5'- cGCGGgggcgcCGAGGAG----GGAGGGGcGCg -3'
miRNA:   3'- -CGCUa-----GCUCCUCuacaCCUCCCCaCG- -5'
29620 3' -55.3 NC_006151.1 + 131708 0.68 0.867935
Target:  5'- aGCGcGUCGcGGGGGAUgagGUGGuaggcGGGGUGg -3'
miRNA:   3'- -CGC-UAGC-UCCUCUA---CACCu----CCCCACg -5'
29620 3' -55.3 NC_006151.1 + 41900 0.68 0.833274
Target:  5'- aGCGGUCauauuuaaauaggGGGGAGggGUuaugcagauuagggGGAGGGGUuauGCa -3'
miRNA:   3'- -CGCUAG-------------CUCCUCuaCA--------------CCUCCCCA---CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.