miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29620 3' -55.3 NC_006151.1 + 30402 0.7 0.746359
Target:  5'- cGCGAgucgaCGGGGAGAggaaGGAGGGGa-- -3'
miRNA:   3'- -CGCUa----GCUCCUCUaca-CCUCCCCacg -5'
29620 3' -55.3 NC_006151.1 + 27532 0.7 0.755979
Target:  5'- cGUGGggGGGGGGggGgggGGGGGGGggGCu -3'
miRNA:   3'- -CGCUagCUCCUCuaCa--CCUCCCCa-CG- -5'
29620 3' -55.3 NC_006151.1 + 71551 0.7 0.755979
Target:  5'- uGCGAggGAGGGGggG-GcGAGGGGgacggGCg -3'
miRNA:   3'- -CGCUagCUCCUCuaCaC-CUCCCCa----CG- -5'
29620 3' -55.3 NC_006151.1 + 80029 0.7 0.755979
Target:  5'- gGCGAUCGGGGAcGGg--GGAGGcGGgagucugGCu -3'
miRNA:   3'- -CGCUAGCUCCU-CUacaCCUCC-CCa------CG- -5'
29620 3' -55.3 NC_006151.1 + 33082 0.69 0.784149
Target:  5'- aGgGggCGAGGgcgGGcgGUGGAGGGGg-- -3'
miRNA:   3'- -CgCuaGCUCC---UCuaCACCUCCCCacg -5'
29620 3' -55.3 NC_006151.1 + 31411 0.69 0.793278
Target:  5'- gGCGAggggaaGGGGaAGggGggGGAcGGGGUGCg -3'
miRNA:   3'- -CGCUag----CUCC-UCuaCa-CCU-CCCCACG- -5'
29620 3' -55.3 NC_006151.1 + 45033 0.69 0.811093
Target:  5'- aGCGAaUGGGG-GAagcGUGG-GGGGUGUg -3'
miRNA:   3'- -CGCUaGCUCCuCUa--CACCuCCCCACG- -5'
29620 3' -55.3 NC_006151.1 + 14505 0.69 0.811093
Target:  5'- aGgGAUCG-GGGGAaGgGGGGGGGUcGUg -3'
miRNA:   3'- -CgCUAGCuCCUCUaCaCCUCCCCA-CG- -5'
29620 3' -55.3 NC_006151.1 + 133631 0.69 0.811093
Target:  5'- cGCGG-CGGccGGGGcgGUGGuccGGGUGCg -3'
miRNA:   3'- -CGCUaGCU--CCUCuaCACCuc-CCCACG- -5'
29620 3' -55.3 NC_006151.1 + 127266 0.69 0.819762
Target:  5'- cGCGGUggccggUGAGGucGAUGacgGGucGGGGGUGCu -3'
miRNA:   3'- -CGCUA------GCUCCu-CUACa--CC--UCCCCACG- -5'
29620 3' -55.3 NC_006151.1 + 41900 0.68 0.833274
Target:  5'- aGCGGUCauauuuaaauaggGGGGAGggGUuaugcagauuagggGGAGGGGUuauGCa -3'
miRNA:   3'- -CGCUAG-------------CUCCUCuaCA--------------CCUCCCCA---CG- -5'
29620 3' -55.3 NC_006151.1 + 110381 0.68 0.83658
Target:  5'- -aGAUCGGGGGGAauUGGGGGGa--- -3'
miRNA:   3'- cgCUAGCUCCUCUacACCUCCCcacg -5'
29620 3' -55.3 NC_006151.1 + 142007 0.68 0.844714
Target:  5'- cGCGGcgUGGGGcGGGUGUGGcaccacGuGGGUGCa -3'
miRNA:   3'- -CGCUa-GCUCC-UCUACACCu-----C-CCCACG- -5'
29620 3' -55.3 NC_006151.1 + 30616 0.68 0.847914
Target:  5'- gGCGGUCGgcgugcgcgcugugcGGGuGGGUGggGGAGGGGguugaugGCc -3'
miRNA:   3'- -CGCUAGC---------------UCC-UCUACa-CCUCCCCa------CG- -5'
29620 3' -55.3 NC_006151.1 + 72580 0.68 0.852656
Target:  5'- gGCGGgugacagagUCGGGGuGAg--GGGGGGG-GCa -3'
miRNA:   3'- -CGCU---------AGCUCCuCUacaCCUCCCCaCG- -5'
29620 3' -55.3 NC_006151.1 + 44394 0.68 0.860398
Target:  5'- cGCGGgggcgcCGAGGAG----GGAGGGGcGCg -3'
miRNA:   3'- -CGCUa-----GCUCCUCuacaCCUCCCCaCG- -5'
29620 3' -55.3 NC_006151.1 + 10357 0.68 0.860398
Target:  5'- cGCGGgaGGGGAGggGagGGAGGGGa-- -3'
miRNA:   3'- -CGCUagCUCCUCuaCa-CCUCCCCacg -5'
29620 3' -55.3 NC_006151.1 + 34398 0.68 0.860398
Target:  5'- aGgGGUgGGGGAGAggagGGGGuGGGUGg -3'
miRNA:   3'- -CgCUAgCUCCUCUaca-CCUC-CCCACg -5'
29620 3' -55.3 NC_006151.1 + 131708 0.68 0.867935
Target:  5'- aGCGcGUCGcGGGGGAUgagGUGGuaggcGGGGUGg -3'
miRNA:   3'- -CGC-UAGC-UCCUCUA---CACCu----CCCCACg -5'
29620 3' -55.3 NC_006151.1 + 29338 0.68 0.867935
Target:  5'- gGCGGgagaGAGGGGggGgGGAGaGGGgGCg -3'
miRNA:   3'- -CGCUag--CUCCUCuaCaCCUC-CCCaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.