miRNA display CGI


Results 1 - 20 of 71 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29620 3' -55.3 NC_006151.1 + 142549 0.66 0.920232
Target:  5'- gGgGAaCGAGGGGGU-UGGGGGGaagGCg -3'
miRNA:   3'- -CgCUaGCUCCUCUAcACCUCCCca-CG- -5'
29620 3' -55.3 NC_006151.1 + 142007 0.68 0.844714
Target:  5'- cGCGGcgUGGGGcGGGUGUGGcaccacGuGGGUGCa -3'
miRNA:   3'- -CGCUa-GCUCC-UCUACACCu-----C-CCCACG- -5'
29620 3' -55.3 NC_006151.1 + 133631 0.69 0.811093
Target:  5'- cGCGG-CGGccGGGGcgGUGGuccGGGUGCg -3'
miRNA:   3'- -CGCUaGCU--CCUCuaCACCuc-CCCACG- -5'
29620 3' -55.3 NC_006151.1 + 131708 0.68 0.867935
Target:  5'- aGCGcGUCGcGGGGGAUgagGUGGuaggcGGGGUGg -3'
miRNA:   3'- -CGC-UAGC-UCCUCUA---CACCu----CCCCACg -5'
29620 3' -55.3 NC_006151.1 + 127266 0.69 0.819762
Target:  5'- cGCGGUggccggUGAGGucGAUGacgGGucGGGGGUGCu -3'
miRNA:   3'- -CGCUA------GCUCCu-CUACa--CC--UCCCCACG- -5'
29620 3' -55.3 NC_006151.1 + 121655 0.67 0.882368
Target:  5'- gGCGGaCGGGcGGGcgGaGGGGGGGaGCg -3'
miRNA:   3'- -CGCUaGCUC-CUCuaCaCCUCCCCaCG- -5'
29620 3' -55.3 NC_006151.1 + 110381 0.68 0.83658
Target:  5'- -aGAUCGGGGGGAauUGGGGGGa--- -3'
miRNA:   3'- cgCUAGCUCCUCUacACCUCCCcacg -5'
29620 3' -55.3 NC_006151.1 + 84385 0.67 0.87526
Target:  5'- gGCGcgCGGGGAcGGgcggGGAGcGGGUGg -3'
miRNA:   3'- -CGCuaGCUCCU-CUaca-CCUC-CCCACg -5'
29620 3' -55.3 NC_006151.1 + 80029 0.7 0.755979
Target:  5'- gGCGAUCGGGGAcGGg--GGAGGcGGgagucugGCu -3'
miRNA:   3'- -CGCUAGCUCCU-CUacaCCUCC-CCa------CG- -5'
29620 3' -55.3 NC_006151.1 + 78370 0.67 0.87526
Target:  5'- aCGAcgGAGGAGAaggGggaGGAGGGG-GCg -3'
miRNA:   3'- cGCUagCUCCUCUa--Ca--CCUCCCCaCG- -5'
29620 3' -55.3 NC_006151.1 + 76675 0.67 0.901713
Target:  5'- cGCGGUCGcuggggagcagggGGGAGA-GUGGcGcGGGcGCg -3'
miRNA:   3'- -CGCUAGC-------------UCCUCUaCACCuC-CCCaCG- -5'
29620 3' -55.3 NC_006151.1 + 75292 0.67 0.874537
Target:  5'- aGCGuggCGuccacguccaggaAGGAGggGUGGcAGaGGGUGCc -3'
miRNA:   3'- -CGCua-GC-------------UCCUCuaCACC-UC-CCCACG- -5'
29620 3' -55.3 NC_006151.1 + 73020 0.66 0.935978
Target:  5'- cGCug-CGAGGcccagggauuGGcgGUGGcgcgguGGGGGUGCg -3'
miRNA:   3'- -CGcuaGCUCC----------UCuaCACC------UCCCCACG- -5'
29620 3' -55.3 NC_006151.1 + 72580 0.68 0.852656
Target:  5'- gGCGGgugacagagUCGGGGuGAg--GGGGGGG-GCa -3'
miRNA:   3'- -CGCU---------AGCUCCuCUacaCCUCCCCaCG- -5'
29620 3' -55.3 NC_006151.1 + 71551 0.7 0.755979
Target:  5'- uGCGAggGAGGGGggG-GcGAGGGGgacggGCg -3'
miRNA:   3'- -CGCUagCUCCUCuaCaC-CUCCCCa----CG- -5'
29620 3' -55.3 NC_006151.1 + 66823 0.71 0.696941
Target:  5'- gGCGA-CGAGGAGGa-UGGGGGGGa-- -3'
miRNA:   3'- -CGCUaGCUCCUCUacACCUCCCCacg -5'
29620 3' -55.3 NC_006151.1 + 49521 0.73 0.605287
Target:  5'- gGCGGaggaCGAGGAGggG-GGAGGGGgGUg -3'
miRNA:   3'- -CGCUa---GCUCCUCuaCaCCUCCCCaCG- -5'
29620 3' -55.3 NC_006151.1 + 45991 0.73 0.584938
Target:  5'- aGCGAcgcuUCGuuuguGGAGAcgcccGUGGAGGGG-GCg -3'
miRNA:   3'- -CGCU----AGCu----CCUCUa----CACCUCCCCaCG- -5'
29620 3' -55.3 NC_006151.1 + 45033 0.69 0.811093
Target:  5'- aGCGAaUGGGG-GAagcGUGG-GGGGUGUg -3'
miRNA:   3'- -CGCUaGCUCCuCUa--CACCuCCCCACG- -5'
29620 3' -55.3 NC_006151.1 + 44841 0.74 0.52491
Target:  5'- cCGGggCGAGcGGGGUcGUGGAGGGGggGCg -3'
miRNA:   3'- cGCUa-GCUC-CUCUA-CACCUCCCCa-CG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.