miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29620 5' -58.7 NC_006151.1 + 58541 0.79 0.184639
Target:  5'- gCCGCCCUCCCCgGuCGUCUC--CUCUUc -3'
miRNA:   3'- -GGCGGGAGGGGgC-GUAGAGaaGAGAG- -5'
29620 5' -58.7 NC_006151.1 + 12099 0.75 0.318022
Target:  5'- cCCGCCCUCCCgCGC-UCUCUUUc--- -3'
miRNA:   3'- -GGCGGGAGGGgGCGuAGAGAAGagag -5'
29620 5' -58.7 NC_006151.1 + 93012 0.74 0.339968
Target:  5'- cUCGCCCUCUCCCcCA-C-CUUCUCUCu -3'
miRNA:   3'- -GGCGGGAGGGGGcGUaGaGAAGAGAG- -5'
29620 5' -58.7 NC_006151.1 + 10147 0.74 0.370902
Target:  5'- cCCGUCC-CCCucuCCGCGUCUCUUCcccgcguccccUCUCu -3'
miRNA:   3'- -GGCGGGaGGG---GGCGUAGAGAAG-----------AGAG- -5'
29620 5' -58.7 NC_006151.1 + 80600 0.73 0.403703
Target:  5'- gCCGuCCCUCUCCCcccuccCGUCUCccgUCUCUCc -3'
miRNA:   3'- -GGC-GGGAGGGGGc-----GUAGAGa--AGAGAG- -5'
29620 5' -58.7 NC_006151.1 + 12693 0.72 0.456191
Target:  5'- uCCGUCCUCCCCauuCAUCUUUUUUC-Ca -3'
miRNA:   3'- -GGCGGGAGGGGgc-GUAGAGAAGAGaG- -5'
29620 5' -58.7 NC_006151.1 + 12899 0.72 0.465294
Target:  5'- cCCGCCCcgCuCCCCGCcccCUCUccccccccccUCUCUCc -3'
miRNA:   3'- -GGCGGGa-G-GGGGCGua-GAGA----------AGAGAG- -5'
29620 5' -58.7 NC_006151.1 + 9422 0.71 0.493148
Target:  5'- cCCGCCggCCCCC-CucuuUCUCUcUCUCUCu -3'
miRNA:   3'- -GGCGGgaGGGGGcGu---AGAGA-AGAGAG- -5'
29620 5' -58.7 NC_006151.1 + 85450 0.71 0.512136
Target:  5'- gCCGCCUUCCUgggCCGCGgccagaacCUCUUC-CUCg -3'
miRNA:   3'- -GGCGGGAGGG---GGCGUa-------GAGAAGaGAG- -5'
29620 5' -58.7 NC_006151.1 + 9179 0.7 0.54116
Target:  5'- aCCGCCCgCCCUCGCcccCUCcgUCUCa- -3'
miRNA:   3'- -GGCGGGaGGGGGCGua-GAGa-AGAGag -5'
29620 5' -58.7 NC_006151.1 + 15923 0.7 0.559825
Target:  5'- gCCGCCCcgugaggcgggccUCgCCCCGCG-CUgUUCUUUCc -3'
miRNA:   3'- -GGCGGG-------------AG-GGGGCGUaGAgAAGAGAG- -5'
29620 5' -58.7 NC_006151.1 + 8794 0.7 0.570713
Target:  5'- uCC-UCCUCUCUCGCcUCUCcUCUCUCu -3'
miRNA:   3'- -GGcGGGAGGGGGCGuAGAGaAGAGAG- -5'
29620 5' -58.7 NC_006151.1 + 117991 0.7 0.570713
Target:  5'- cCCGUCUcgUCUCgCCGCGUCUCgUCUCa- -3'
miRNA:   3'- -GGCGGG--AGGG-GGCGUAGAGaAGAGag -5'
29620 5' -58.7 NC_006151.1 + 8837 0.7 0.580655
Target:  5'- gCGCCuCUCCCCgugCGUGUCUCgcucgccCUCUCc -3'
miRNA:   3'- gGCGG-GAGGGG---GCGUAGAGaa-----GAGAG- -5'
29620 5' -58.7 NC_006151.1 + 12803 0.7 0.590634
Target:  5'- gCGCCCgcUCCCuCCGCGUCcc--CUCUCc -3'
miRNA:   3'- gGCGGG--AGGG-GGCGUAGagaaGAGAG- -5'
29620 5' -58.7 NC_006151.1 + 26455 0.69 0.610671
Target:  5'- gCCGUCUUCCCCCcCGUCcucccCUUC-CUCg -3'
miRNA:   3'- -GGCGGGAGGGGGcGUAGa----GAAGaGAG- -5'
29620 5' -58.7 NC_006151.1 + 12464 0.69 0.610671
Target:  5'- aCCacCCCUCCCCUcCcUCUCcUCUCUCu -3'
miRNA:   3'- -GGc-GGGAGGGGGcGuAGAGaAGAGAG- -5'
29620 5' -58.7 NC_006151.1 + 131275 0.69 0.63077
Target:  5'- gCGCCC-CCCUCGC-UCUCcUC-CUCc -3'
miRNA:   3'- gGCGGGaGGGGGCGuAGAGaAGaGAG- -5'
29620 5' -58.7 NC_006151.1 + 56791 0.69 0.640825
Target:  5'- aC-CCCUCCCCC-CcUCUCccccUCUCUCg -3'
miRNA:   3'- gGcGGGAGGGGGcGuAGAGa---AGAGAG- -5'
29620 5' -58.7 NC_006151.1 + 32696 0.69 0.640825
Target:  5'- cCCGUCUguuccuUCCCCCGCuUCcccguuucuUCUUCUUUCc -3'
miRNA:   3'- -GGCGGG------AGGGGGCGuAG---------AGAAGAGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.