Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29620 | 5' | -58.7 | NC_006151.1 | + | 881 | 0.67 | 0.758633 |
Target: 5'- cCCGCUCUCCCaCCGCcUUUCccUCccCUCc -3' miRNA: 3'- -GGCGGGAGGG-GGCGuAGAGa-AGa-GAG- -5' |
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29620 | 5' | -58.7 | NC_006151.1 | + | 5398 | 0.68 | 0.684881 |
Target: 5'- cCCGCCgUCCCCgGCGaggccgaguccguccUCgucCUUCUCg- -3' miRNA: 3'- -GGCGGgAGGGGgCGU---------------AGa--GAAGAGag -5' |
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29620 | 5' | -58.7 | NC_006151.1 | + | 7013 | 0.66 | 0.776246 |
Target: 5'- aUGUCCggCCCCCGCGgcggccaUCUCggCUCg- -3' miRNA: 3'- gGCGGGa-GGGGGCGU-------AGAGaaGAGag -5' |
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29620 | 5' | -58.7 | NC_006151.1 | + | 7850 | 0.66 | 0.789836 |
Target: 5'- gUCGCCCacccacccccuccucUCCCCCaccccucUAUCUCU-CUCUCc -3' miRNA: 3'- -GGCGGG---------------AGGGGGc------GUAGAGAaGAGAG- -5' |
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29620 | 5' | -58.7 | NC_006151.1 | + | 8794 | 0.7 | 0.570713 |
Target: 5'- uCC-UCCUCUCUCGCcUCUCcUCUCUCu -3' miRNA: 3'- -GGcGGGAGGGGGCGuAGAGaAGAGAG- -5' |
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29620 | 5' | -58.7 | NC_006151.1 | + | 8837 | 0.7 | 0.580655 |
Target: 5'- gCGCCuCUCCCCgugCGUGUCUCgcucgccCUCUCc -3' miRNA: 3'- gGCGG-GAGGGG---GCGUAGAGaa-----GAGAG- -5' |
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29620 | 5' | -58.7 | NC_006151.1 | + | 8895 | 0.66 | 0.786241 |
Target: 5'- uCCGaCUCUCCUCCGUcuccUCUCcucCUCUCc -3' miRNA: 3'- -GGC-GGGAGGGGGCGu---AGAGaa-GAGAG- -5' |
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29620 | 5' | -58.7 | NC_006151.1 | + | 9179 | 0.7 | 0.54116 |
Target: 5'- aCCGCCCgCCCUCGCcccCUCcgUCUCa- -3' miRNA: 3'- -GGCGGGaGGGGGCGua-GAGa-AGAGag -5' |
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29620 | 5' | -58.7 | NC_006151.1 | + | 9422 | 0.71 | 0.493148 |
Target: 5'- cCCGCCggCCCCC-CucuuUCUCUcUCUCUCu -3' miRNA: 3'- -GGCGGgaGGGGGcGu---AGAGA-AGAGAG- -5' |
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29620 | 5' | -58.7 | NC_006151.1 | + | 10147 | 0.74 | 0.370902 |
Target: 5'- cCCGUCC-CCCucuCCGCGUCUCUUCcccgcguccccUCUCu -3' miRNA: 3'- -GGCGGGaGGG---GGCGUAGAGAAG-----------AGAG- -5' |
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29620 | 5' | -58.7 | NC_006151.1 | + | 12099 | 0.75 | 0.318022 |
Target: 5'- cCCGCCCUCCCgCGC-UCUCUUUc--- -3' miRNA: 3'- -GGCGGGAGGGgGCGuAGAGAAGagag -5' |
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29620 | 5' | -58.7 | NC_006151.1 | + | 12464 | 0.69 | 0.610671 |
Target: 5'- aCCacCCCUCCCCUcCcUCUCcUCUCUCu -3' miRNA: 3'- -GGc-GGGAGGGGGcGuAGAGaAGAGAG- -5' |
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29620 | 5' | -58.7 | NC_006151.1 | + | 12693 | 0.72 | 0.456191 |
Target: 5'- uCCGUCCUCCCCauuCAUCUUUUUUC-Ca -3' miRNA: 3'- -GGCGGGAGGGGgc-GUAGAGAAGAGaG- -5' |
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29620 | 5' | -58.7 | NC_006151.1 | + | 12803 | 0.7 | 0.590634 |
Target: 5'- gCGCCCgcUCCCuCCGCGUCcc--CUCUCc -3' miRNA: 3'- gGCGGG--AGGG-GGCGUAGagaaGAGAG- -5' |
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29620 | 5' | -58.7 | NC_006151.1 | + | 12855 | 0.66 | 0.803992 |
Target: 5'- -aGCCUUCUCCgCGCGgucccgcCUCUcCUCUCc -3' miRNA: 3'- ggCGGGAGGGG-GCGUa------GAGAaGAGAG- -5' |
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29620 | 5' | -58.7 | NC_006151.1 | + | 12899 | 0.72 | 0.465294 |
Target: 5'- cCCGCCCcgCuCCCCGCcccCUCUccccccccccUCUCUCc -3' miRNA: 3'- -GGCGGGa-G-GGGGCGua-GAGA----------AGAGAG- -5' |
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29620 | 5' | -58.7 | NC_006151.1 | + | 15923 | 0.7 | 0.559825 |
Target: 5'- gCCGCCCcgugaggcgggccUCgCCCCGCG-CUgUUCUUUCc -3' miRNA: 3'- -GGCGGG-------------AG-GGGGCGUaGAgAAGAGAG- -5' |
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29620 | 5' | -58.7 | NC_006151.1 | + | 26404 | 0.66 | 0.803992 |
Target: 5'- cCCGCCCUCCUcgcccucuCCGUcuUCgUCUUCgUCUUc -3' miRNA: 3'- -GGCGGGAGGG--------GGCGu-AG-AGAAG-AGAG- -5' |
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29620 | 5' | -58.7 | NC_006151.1 | + | 26455 | 0.69 | 0.610671 |
Target: 5'- gCCGUCUUCCCCCcCGUCcucccCUUC-CUCg -3' miRNA: 3'- -GGCGGGAGGGGGcGUAGa----GAAGaGAG- -5' |
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29620 | 5' | -58.7 | NC_006151.1 | + | 29860 | 0.66 | 0.777161 |
Target: 5'- gCC-CCCUCUccaguuCCCGC-UCUCgcUCUCUCc -3' miRNA: 3'- -GGcGGGAGG------GGGCGuAGAGa-AGAGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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