miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29621 5' -51.6 NC_006151.1 + 31649 0.8 0.362323
Target:  5'- -cGCgggCGCGCGGGGAGGGAGGa--- -3'
miRNA:   3'- guCGaa-GCGCGCCCCUCCUUUUauua -5'
29621 5' -51.6 NC_006151.1 + 30277 0.76 0.553702
Target:  5'- aCAGCggCGCGgGGGGAGGGuguGUAu- -3'
miRNA:   3'- -GUCGaaGCGCgCCCCUCCUuu-UAUua -5'
29621 5' -51.6 NC_006151.1 + 27941 0.75 0.63906
Target:  5'- gAGCcgaUCGCGCGGGGuGGGGAGg--- -3'
miRNA:   3'- gUCGa--AGCGCGCCCCuCCUUUUauua -5'
29621 5' -51.6 NC_006151.1 + 61277 0.72 0.784248
Target:  5'- gCGGUaUCGUGCGGGGAcGGAAGc---- -3'
miRNA:   3'- -GUCGaAGCGCGCCCCU-CCUUUuauua -5'
29621 5' -51.6 NC_006151.1 + 33159 0.72 0.812509
Target:  5'- aGGCgggUCGgggGCGGGGAGGAAGGg--- -3'
miRNA:   3'- gUCGa--AGCg--CGCCCCUCCUUUUauua -5'
29621 5' -51.6 NC_006151.1 + 29469 0.71 0.855886
Target:  5'- gAGCgggCGCGcCGGGaGAGGAAAGg--- -3'
miRNA:   3'- gUCGaa-GCGC-GCCC-CUCCUUUUauua -5'
29621 5' -51.6 NC_006151.1 + 84382 0.71 0.855886
Target:  5'- -cGCggCGCGCGGGGAcgggcgGGGAGcgGGUg -3'
miRNA:   3'- guCGaaGCGCGCCCCU------CCUUUuaUUA- -5'
29621 5' -51.6 NC_006151.1 + 30621 0.7 0.861537
Target:  5'- uCGGCgugCGCGCugugcgggugggugGGGGAGGggGuUGAUg -3'
miRNA:   3'- -GUCGaa-GCGCG--------------CCCCUCCuuUuAUUA- -5'
29621 5' -51.6 NC_006151.1 + 9507 0.7 0.863925
Target:  5'- gAGCggggCGUGUGGGGaAGGAAGAg--- -3'
miRNA:   3'- gUCGaa--GCGCGCCCC-UCCUUUUauua -5'
29621 5' -51.6 NC_006151.1 + 54147 0.7 0.893716
Target:  5'- cCGGCggCGcCGCGGaGGAGGcuAAUAAc -3'
miRNA:   3'- -GUCGaaGC-GCGCC-CCUCCuuUUAUUa -5'
29621 5' -51.6 NC_006151.1 + 110773 0.69 0.899875
Target:  5'- gCGGCUgcuuuauugaUCGCGCGGGGcuagggcGGGggGcgAGg -3'
miRNA:   3'- -GUCGA----------AGCGCGCCCC-------UCCuuUuaUUa -5'
29621 5' -51.6 NC_006151.1 + 43214 0.69 0.913435
Target:  5'- cCGGCgcUGC-CGGGGGGGAAAAg--- -3'
miRNA:   3'- -GUCGaaGCGcGCCCCUCCUUUUauua -5'
29621 5' -51.6 NC_006151.1 + 10020 0.69 0.913435
Target:  5'- gCGGCggUCGcCGCGGccaGGAGGAAAAa--- -3'
miRNA:   3'- -GUCGa-AGC-GCGCC---CCUCCUUUUauua -5'
29621 5' -51.6 NC_006151.1 + 33971 0.68 0.930266
Target:  5'- gCGGCgccCGCGCGGGGAcacucuuucccccGGAGGGg--- -3'
miRNA:   3'- -GUCGaa-GCGCGCCCCU-------------CCUUUUauua -5'
29621 5' -51.6 NC_006151.1 + 133501 0.68 0.941073
Target:  5'- uGGCggCGCGgGGGGcgcGGGAGGAg--- -3'
miRNA:   3'- gUCGaaGCGCgCCCC---UCCUUUUauua -5'
29621 5' -51.6 NC_006151.1 + 16721 0.68 0.941073
Target:  5'- gGGCa--GCGgGGGGGGGGGAAg--- -3'
miRNA:   3'- gUCGaagCGCgCCCCUCCUUUUauua -5'
29621 5' -51.6 NC_006151.1 + 112275 0.68 0.945353
Target:  5'- uUAGCUUgGCGUccgucguGGGGAGGAu------ -3'
miRNA:   3'- -GUCGAAgCGCG-------CCCCUCCUuuuauua -5'
29621 5' -51.6 NC_006151.1 + 100305 0.68 0.945815
Target:  5'- -cGuCUUCGCGCccGGGGAGGGu------ -3'
miRNA:   3'- guC-GAAGCGCG--CCCCUCCUuuuauua -5'
29621 5' -51.6 NC_006151.1 + 135111 0.68 0.950299
Target:  5'- gCGGCgguagCGCGCGGGGcGGGc------ -3'
miRNA:   3'- -GUCGaa---GCGCGCCCCuCCUuuuauua -5'
29621 5' -51.6 NC_006151.1 + 11768 0.68 0.950299
Target:  5'- gAGCgugCGCGaaGGGGGGAGAGg--- -3'
miRNA:   3'- gUCGaa-GCGCgcCCCUCCUUUUauua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.