Results 1 - 20 of 39 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29621 | 5' | -51.6 | NC_006151.1 | + | 9507 | 0.7 | 0.863925 |
Target: 5'- gAGCggggCGUGUGGGGaAGGAAGAg--- -3' miRNA: 3'- gUCGaa--GCGCGCCCC-UCCUUUUauua -5' |
|||||||
29621 | 5' | -51.6 | NC_006151.1 | + | 10020 | 0.69 | 0.913435 |
Target: 5'- gCGGCggUCGcCGCGGccaGGAGGAAAAa--- -3' miRNA: 3'- -GUCGa-AGC-GCGCC---CCUCCUUUUauua -5' |
|||||||
29621 | 5' | -51.6 | NC_006151.1 | + | 10439 | 0.66 | 0.984055 |
Target: 5'- aGGC--CG-GCGGGGAGGGAGGa--- -3' miRNA: 3'- gUCGaaGCgCGCCCCUCCUUUUauua -5' |
|||||||
29621 | 5' | -51.6 | NC_006151.1 | + | 11768 | 0.68 | 0.950299 |
Target: 5'- gAGCgugCGCGaaGGGGGGAGAGg--- -3' miRNA: 3'- gUCGaa-GCGCgcCCCUCCUUUUauua -5' |
|||||||
29621 | 5' | -51.6 | NC_006151.1 | + | 15709 | 0.66 | 0.977439 |
Target: 5'- gGGCUcggaCGacgGCGGGGAcggGGAAGAUGAa -3' miRNA: 3'- gUCGAa---GCg--CGCCCCU---CCUUUUAUUa -5' |
|||||||
29621 | 5' | -51.6 | NC_006151.1 | + | 16721 | 0.68 | 0.941073 |
Target: 5'- gGGCa--GCGgGGGGGGGGGAAg--- -3' miRNA: 3'- gUCGaagCGCgCCCCUCCUUUUauua -5' |
|||||||
29621 | 5' | -51.6 | NC_006151.1 | + | 23000 | 0.67 | 0.968993 |
Target: 5'- uCGGC--CGCGCGGGuGGGGGcgcggGGGUGGUg -3' miRNA: 3'- -GUCGaaGCGCGCCC-CUCCU-----UUUAUUA- -5' |
|||||||
29621 | 5' | -51.6 | NC_006151.1 | + | 27941 | 0.75 | 0.63906 |
Target: 5'- gAGCcgaUCGCGCGGGGuGGGGAGg--- -3' miRNA: 3'- gUCGa--AGCGCGCCCCuCCUUUUauua -5' |
|||||||
29621 | 5' | -51.6 | NC_006151.1 | + | 29469 | 0.71 | 0.855886 |
Target: 5'- gAGCgggCGCGcCGGGaGAGGAAAGg--- -3' miRNA: 3'- gUCGaa-GCGC-GCCC-CUCCUUUUauua -5' |
|||||||
29621 | 5' | -51.6 | NC_006151.1 | + | 30277 | 0.76 | 0.553702 |
Target: 5'- aCAGCggCGCGgGGGGAGGGuguGUAu- -3' miRNA: 3'- -GUCGaaGCGCgCCCCUCCUuu-UAUua -5' |
|||||||
29621 | 5' | -51.6 | NC_006151.1 | + | 30621 | 0.7 | 0.861537 |
Target: 5'- uCGGCgugCGCGCugugcgggugggugGGGGAGGggGuUGAUg -3' miRNA: 3'- -GUCGaa-GCGCG--------------CCCCUCCuuUuAUUA- -5' |
|||||||
29621 | 5' | -51.6 | NC_006151.1 | + | 30866 | 0.66 | 0.984055 |
Target: 5'- gCGGCggCG-GCGGaGGAGGggGGa--- -3' miRNA: 3'- -GUCGaaGCgCGCC-CCUCCuuUUauua -5' |
|||||||
29621 | 5' | -51.6 | NC_006151.1 | + | 31649 | 0.8 | 0.362323 |
Target: 5'- -cGCgggCGCGCGGGGAGGGAGGa--- -3' miRNA: 3'- guCGaa-GCGCGCCCCUCCUUUUauua -5' |
|||||||
29621 | 5' | -51.6 | NC_006151.1 | + | 32362 | 0.67 | 0.972026 |
Target: 5'- gGGCUUucuucccggacCGC-CGGGGAGGAAGc---- -3' miRNA: 3'- gUCGAA-----------GCGcGCCCCUCCUUUuauua -5' |
|||||||
29621 | 5' | -51.6 | NC_006151.1 | + | 33085 | 0.67 | 0.972026 |
Target: 5'- gGGCgagggCGgGCGGuGGAGGggGGa--- -3' miRNA: 3'- gUCGaa---GCgCGCC-CCUCCuuUUauua -5' |
|||||||
29621 | 5' | -51.6 | NC_006151.1 | + | 33159 | 0.72 | 0.812509 |
Target: 5'- aGGCgggUCGgggGCGGGGAGGAAGGg--- -3' miRNA: 3'- gUCGa--AGCg--CGCCCCUCCUUUUauua -5' |
|||||||
29621 | 5' | -51.6 | NC_006151.1 | + | 33971 | 0.68 | 0.930266 |
Target: 5'- gCGGCgccCGCGCGGGGAcacucuuucccccGGAGGGg--- -3' miRNA: 3'- -GUCGaa-GCGCGCCCCU-------------CCUUUUauua -5' |
|||||||
29621 | 5' | -51.6 | NC_006151.1 | + | 41296 | 0.67 | 0.965395 |
Target: 5'- aAGUgugUGCGUgagggggGGGGGGGggGGUGGUg -3' miRNA: 3'- gUCGaa-GCGCG-------CCCCUCCuuUUAUUA- -5' |
|||||||
29621 | 5' | -51.6 | NC_006151.1 | + | 41360 | 0.67 | 0.968993 |
Target: 5'- uGGUcgUCGUGgaGGGGAGGGAAAg--- -3' miRNA: 3'- gUCGa-AGCGCg-CCCCUCCUUUUauua -5' |
|||||||
29621 | 5' | -51.6 | NC_006151.1 | + | 43214 | 0.69 | 0.913435 |
Target: 5'- cCGGCgcUGC-CGGGGGGGAAAAg--- -3' miRNA: 3'- -GUCGaaGCGcGCCCCUCCUUUUauua -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home