Results 21 - 39 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29621 | 5' | -51.6 | NC_006151.1 | + | 44451 | 0.66 | 0.977439 |
Target: 5'- gAGCUcUCGCGacgcgauGGGGGGuGAGGGUGGa -3' miRNA: 3'- gUCGA-AGCGCg------CCCCUC-CUUUUAUUa -5' |
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29621 | 5' | -51.6 | NC_006151.1 | + | 49519 | 0.66 | 0.984055 |
Target: 5'- cCGGCggaggaCGaggaGgGGGGAGGggGGUGGg -3' miRNA: 3'- -GUCGaa----GCg---CgCCCCUCCuuUUAUUa -5' |
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29621 | 5' | -51.6 | NC_006151.1 | + | 54147 | 0.7 | 0.893716 |
Target: 5'- cCGGCggCGcCGCGGaGGAGGcuAAUAAc -3' miRNA: 3'- -GUCGaaGC-GCGCC-CCUCCuuUUAUUa -5' |
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29621 | 5' | -51.6 | NC_006151.1 | + | 61277 | 0.72 | 0.784248 |
Target: 5'- gCGGUaUCGUGCGGGGAcGGAAGc---- -3' miRNA: 3'- -GUCGaAGCGCGCCCCU-CCUUUuauua -5' |
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29621 | 5' | -51.6 | NC_006151.1 | + | 63511 | 0.67 | 0.962241 |
Target: 5'- aGGUgggggCGCGCGGGGcggucgGGGAAGAc--- -3' miRNA: 3'- gUCGaa---GCGCGCCCC------UCCUUUUauua -5' |
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29621 | 5' | -51.6 | NC_006151.1 | + | 76664 | 0.67 | 0.964711 |
Target: 5'- gGGCgcgugUGCGCGgucgcuggggagcaGGGGGGAGAGUGGc -3' miRNA: 3'- gUCGaa---GCGCGC--------------CCCUCCUUUUAUUa -5' |
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29621 | 5' | -51.6 | NC_006151.1 | + | 80418 | 0.66 | 0.977439 |
Target: 5'- cCGGUgggaaaugUGUGCGGGGA-GAGAGUGGUg -3' miRNA: 3'- -GUCGaa------GCGCGCCCCUcCUUUUAUUA- -5' |
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29621 | 5' | -51.6 | NC_006151.1 | + | 84382 | 0.71 | 0.855886 |
Target: 5'- -cGCggCGCGCGGGGAcgggcgGGGAGcgGGUg -3' miRNA: 3'- guCGaaGCGCGCCCCU------CCUUUuaUUA- -5' |
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29621 | 5' | -51.6 | NC_006151.1 | + | 89173 | 0.66 | 0.977439 |
Target: 5'- aGGCgg-GCGCGGGGGucGGggGcgGAg -3' miRNA: 3'- gUCGaagCGCGCCCCU--CCuuUuaUUa -5' |
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29621 | 5' | -51.6 | NC_006151.1 | + | 100305 | 0.68 | 0.945815 |
Target: 5'- -cGuCUUCGCGCccGGGGAGGGu------ -3' miRNA: 3'- guC-GAAGCGCG--CCCCUCCUuuuauua -5' |
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29621 | 5' | -51.6 | NC_006151.1 | + | 104012 | 0.67 | 0.965734 |
Target: 5'- aGGCgcgcCGCGCGGcGGAGGugGAg--- -3' miRNA: 3'- gUCGaa--GCGCGCC-CCUCCuuUUauua -5' |
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29621 | 5' | -51.6 | NC_006151.1 | + | 104833 | 0.66 | 0.977439 |
Target: 5'- aCGGCcUCGcCGCGGcGGAGGcgGAc--- -3' miRNA: 3'- -GUCGaAGC-GCGCC-CCUCCuuUUauua -5' |
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29621 | 5' | -51.6 | NC_006151.1 | + | 110773 | 0.69 | 0.899875 |
Target: 5'- gCGGCUgcuuuauugaUCGCGCGGGGcuagggcGGGggGcgAGg -3' miRNA: 3'- -GUCGA----------AGCGCGCCCC-------UCCuuUuaUUa -5' |
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29621 | 5' | -51.6 | NC_006151.1 | + | 112275 | 0.68 | 0.945353 |
Target: 5'- uUAGCUUgGCGUccgucguGGGGAGGAu------ -3' miRNA: 3'- -GUCGAAgCGCG-------CCCCUCCUuuuauua -5' |
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29621 | 5' | -51.6 | NC_006151.1 | + | 121906 | 0.67 | 0.968993 |
Target: 5'- -cGCguaCGCGCGGGccGAGGggGAc--- -3' miRNA: 3'- guCGaa-GCGCGCCC--CUCCuuUUauua -5' |
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29621 | 5' | -51.6 | NC_006151.1 | + | 130946 | 0.66 | 0.984055 |
Target: 5'- gCGGCggggggUCGCGCGGGcGcGGggGc---- -3' miRNA: 3'- -GUCGa-----AGCGCGCCC-CuCCuuUuauua -5' |
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29621 | 5' | -51.6 | NC_006151.1 | + | 133501 | 0.68 | 0.941073 |
Target: 5'- uGGCggCGCGgGGGGcgcGGGAGGAg--- -3' miRNA: 3'- gUCGaaGCGCgCCCC---UCCUUUUauua -5' |
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29621 | 5' | -51.6 | NC_006151.1 | + | 135111 | 0.68 | 0.950299 |
Target: 5'- gCGGCgguagCGCGCGGGGcGGGc------ -3' miRNA: 3'- -GUCGaa---GCGCGCCCCuCCUuuuauua -5' |
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29621 | 5' | -51.6 | NC_006151.1 | + | 135534 | 0.67 | 0.972026 |
Target: 5'- gCGGCgagCgGgGCGGGGAGGAu------ -3' miRNA: 3'- -GUCGaa-G-CgCGCCCCUCCUuuuauua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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