miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29622 5' -61.7 NC_006151.1 + 873 1.04 0.001549
Target:  5'- cUGUUCCGCCCGCUCUCCCACCGCCUUu -3'
miRNA:   3'- -ACAAGGCGGGCGAGAGGGUGGCGGAA- -5'
29622 5' -61.7 NC_006151.1 + 11300 0.85 0.040821
Target:  5'- ---cCCGCCCGCUCUCCCggGCCGCCg- -3'
miRNA:   3'- acaaGGCGGGCGAGAGGG--UGGCGGaa -5'
29622 5' -61.7 NC_006151.1 + 34569 0.77 0.135542
Target:  5'- gGUUCCGCUCGuCUCUCCgACCGgCUg -3'
miRNA:   3'- aCAAGGCGGGC-GAGAGGgUGGCgGAa -5'
29622 5' -61.7 NC_006151.1 + 37911 0.76 0.17402
Target:  5'- --cUgCGCCCGCg-UCCCGCCGCCUUc -3'
miRNA:   3'- acaAgGCGGGCGagAGGGUGGCGGAA- -5'
29622 5' -61.7 NC_006151.1 + 109588 0.75 0.201547
Target:  5'- cGgcCCGCCCGCgcUCUucacCCCGCCGCCg- -3'
miRNA:   3'- aCaaGGCGGGCG--AGA----GGGUGGCGGaa -5'
29622 5' -61.7 NC_006151.1 + 122543 0.73 0.244063
Target:  5'- gUGUUCCgGCCCGC-CUCgCGgCGCCUg -3'
miRNA:   3'- -ACAAGG-CGGGCGaGAGgGUgGCGGAa -5'
29622 5' -61.7 NC_006151.1 + 101998 0.73 0.249873
Target:  5'- aGUUCCGCCCGCgcaCCCGCgaGCCc- -3'
miRNA:   3'- aCAAGGCGGGCGagaGGGUGg-CGGaa -5'
29622 5' -61.7 NC_006151.1 + 61447 0.73 0.267988
Target:  5'- ---cCCGCCCGCg--UCCGCCGCCa- -3'
miRNA:   3'- acaaGGCGGGCGagaGGGUGGCGGaa -5'
29622 5' -61.7 NC_006151.1 + 35854 0.72 0.274258
Target:  5'- ---gCCGCCCGCUCUCCgCGCucggCGCCc- -3'
miRNA:   3'- acaaGGCGGGCGAGAGG-GUG----GCGGaa -5'
29622 5' -61.7 NC_006151.1 + 11348 0.72 0.294441
Target:  5'- cGggCCGCCCGCgggcgcuaccgcgcgCUCCgcuCGCCGCCUc -3'
miRNA:   3'- aCaaGGCGGGCGa--------------GAGG---GUGGCGGAa -5'
29622 5' -61.7 NC_006151.1 + 12004 0.71 0.314352
Target:  5'- cUGUggCGCCCGUcgucUCUCCCGCCGgCg- -3'
miRNA:   3'- -ACAagGCGGGCG----AGAGGGUGGCgGaa -5'
29622 5' -61.7 NC_006151.1 + 112225 0.71 0.32145
Target:  5'- --gUCgCGCUCGCUCgUCgCCGCCGCCa- -3'
miRNA:   3'- acaAG-GCGGGCGAG-AG-GGUGGCGGaa -5'
29622 5' -61.7 NC_006151.1 + 107562 0.71 0.34121
Target:  5'- ---gCCGCCCGCcaagcccgcggagcUgaCUCCCGCCGCCa- -3'
miRNA:   3'- acaaGGCGGGCG--------------A--GAGGGUGGCGGaa -5'
29622 5' -61.7 NC_006151.1 + 10488 0.71 0.351033
Target:  5'- aGagCCGCCCgGCgcgCgCCCGCCGCCg- -3'
miRNA:   3'- aCaaGGCGGG-CGa--GaGGGUGGCGGaa -5'
29622 5' -61.7 NC_006151.1 + 11018 0.7 0.374458
Target:  5'- ---cCCGCCCGCUCgCUCGCCggGCCg- -3'
miRNA:   3'- acaaGGCGGGCGAGaGGGUGG--CGGaa -5'
29622 5' -61.7 NC_006151.1 + 108233 0.7 0.382498
Target:  5'- ---aCCGCCCGCccCUCcaCCACCGUCUg -3'
miRNA:   3'- acaaGGCGGGCGa-GAG--GGUGGCGGAa -5'
29622 5' -61.7 NC_006151.1 + 114439 0.7 0.398919
Target:  5'- cUGgaCCGCCUGCUCggggCCugCGCCg- -3'
miRNA:   3'- -ACaaGGCGGGCGAGag--GGugGCGGaa -5'
29622 5' -61.7 NC_006151.1 + 32764 0.7 0.398919
Target:  5'- ----aCGcCCCGCUCUCCCAC-GCCg- -3'
miRNA:   3'- acaagGC-GGGCGAGAGGGUGgCGGaa -5'
29622 5' -61.7 NC_006151.1 + 101850 0.7 0.407297
Target:  5'- ---cCCGCCCcggcacccggcgGCgcaccgCUCCCGCCGCCg- -3'
miRNA:   3'- acaaGGCGGG------------CGa-----GAGGGUGGCGGaa -5'
29622 5' -61.7 NC_006151.1 + 31596 0.69 0.415785
Target:  5'- cGcUCCGC--GCUCcCCCGCCGCCUg -3'
miRNA:   3'- aCaAGGCGggCGAGaGGGUGGCGGAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.