miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29622 5' -61.7 NC_006151.1 + 873 1.04 0.001549
Target:  5'- cUGUUCCGCCCGCUCUCCCACCGCCUUu -3'
miRNA:   3'- -ACAAGGCGGGCGAGAGGGUGGCGGAA- -5'
29622 5' -61.7 NC_006151.1 + 6744 0.66 0.59392
Target:  5'- -uUUCuCGCCCGCU-UCCUcuGCCGUCUg -3'
miRNA:   3'- acAAG-GCGGGCGAgAGGG--UGGCGGAa -5'
29622 5' -61.7 NC_006151.1 + 8877 0.67 0.554383
Target:  5'- cUGUccUCCGCCCGacuuuccgaCUCUCCU-CCGUCUc -3'
miRNA:   3'- -ACA--AGGCGGGC---------GAGAGGGuGGCGGAa -5'
29622 5' -61.7 NC_006151.1 + 10488 0.71 0.351033
Target:  5'- aGagCCGCCCgGCgcgCgCCCGCCGCCg- -3'
miRNA:   3'- aCaaGGCGGG-CGa--GaGGGUGGCGGaa -5'
29622 5' -61.7 NC_006151.1 + 11018 0.7 0.374458
Target:  5'- ---cCCGCCCGCUCgCUCGCCggGCCg- -3'
miRNA:   3'- acaaGGCGGGCGAGaGGGUGG--CGGaa -5'
29622 5' -61.7 NC_006151.1 + 11300 0.85 0.040821
Target:  5'- ---cCCGCCCGCUCUCCCggGCCGCCg- -3'
miRNA:   3'- acaaGGCGGGCGAGAGGG--UGGCGGaa -5'
29622 5' -61.7 NC_006151.1 + 11348 0.72 0.294441
Target:  5'- cGggCCGCCCGCgggcgcuaccgcgcgCUCCgcuCGCCGCCUc -3'
miRNA:   3'- aCaaGGCGGGCGa--------------GAGG---GUGGCGGAa -5'
29622 5' -61.7 NC_006151.1 + 11660 0.68 0.476226
Target:  5'- ---aCCGCCCGCguuugcuacgaUCCCugCGCCc- -3'
miRNA:   3'- acaaGGCGGGCGag---------AGGGugGCGGaa -5'
29622 5' -61.7 NC_006151.1 + 12004 0.71 0.314352
Target:  5'- cUGUggCGCCCGUcgucUCUCCCGCCGgCg- -3'
miRNA:   3'- -ACAagGCGGGCG----AGAGGGUGGCgGaa -5'
29622 5' -61.7 NC_006151.1 + 12814 0.67 0.554383
Target:  5'- --cUCCGCguCCcCUCUcCCCGCCGCCc- -3'
miRNA:   3'- acaAGGCG--GGcGAGA-GGGUGGCGGaa -5'
29622 5' -61.7 NC_006151.1 + 12899 0.68 0.487345
Target:  5'- ---cCCGcCCCGCUC-CCCGCCcCCUc -3'
miRNA:   3'- acaaGGC-GGGCGAGaGGGUGGcGGAa -5'
29622 5' -61.7 NC_006151.1 + 14805 0.67 0.544612
Target:  5'- ---aCCGCCCGCcCccgaCCCACCGCg-- -3'
miRNA:   3'- acaaGGCGGGCGaGa---GGGUGGCGgaa -5'
29622 5' -61.7 NC_006151.1 + 17787 0.66 0.623874
Target:  5'- --cUCCGCCCGCUUcgCCC-CC-CCg- -3'
miRNA:   3'- acaAGGCGGGCGAGa-GGGuGGcGGaa -5'
29622 5' -61.7 NC_006151.1 + 22094 0.66 0.623874
Target:  5'- gUGggCCGCCgGUggg-CCACCGCCUc -3'
miRNA:   3'- -ACaaGGCGGgCGagagGGUGGCGGAa -5'
29622 5' -61.7 NC_006151.1 + 25739 0.66 0.63388
Target:  5'- --cUCCGUCCuuuCUCUCCCuccACCGUCUc -3'
miRNA:   3'- acaAGGCGGGc--GAGAGGG---UGGCGGAa -5'
29622 5' -61.7 NC_006151.1 + 29871 0.66 0.603887
Target:  5'- aGUUcCCGCUcuCGCUCUCuCCuuCGCCa- -3'
miRNA:   3'- aCAA-GGCGG--GCGAGAG-GGugGCGGaa -5'
29622 5' -61.7 NC_006151.1 + 30468 0.66 0.623874
Target:  5'- ---cCCGCCC-CUCUcgCCCACgCGCCc- -3'
miRNA:   3'- acaaGGCGGGcGAGA--GGGUG-GCGGaa -5'
29622 5' -61.7 NC_006151.1 + 30555 0.69 0.450787
Target:  5'- cGUUCCGCgCCGCacgCgccgUCCCGCgGCCc- -3'
miRNA:   3'- aCAAGGCG-GGCGa--G----AGGGUGgCGGaa -5'
29622 5' -61.7 NC_006151.1 + 31596 0.69 0.415785
Target:  5'- cGcUCCGC--GCUCcCCCGCCGCCUg -3'
miRNA:   3'- aCaAGGCGggCGAGaGGGUGGCGGAa -5'
29622 5' -61.7 NC_006151.1 + 32183 0.67 0.551446
Target:  5'- --cUCCGCCCGcCUUUCCUucccggacucgggaGCCGCUc- -3'
miRNA:   3'- acaAGGCGGGC-GAGAGGG--------------UGGCGGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.