miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29624 3' -58.4 NC_006151.1 + 4548 1.13 0.000888
Target:  5'- gCCAUGGCGUCCCCGAUGUGCGGCAGCg -3'
miRNA:   3'- -GGUACCGCAGGGGCUACACGCCGUCG- -5'
29624 3' -58.4 NC_006151.1 + 73734 0.79 0.202037
Target:  5'- aCCGUGGCGUaguaguuggCCCCGAgaaaGUGgGGCAcGCa -3'
miRNA:   3'- -GGUACCGCA---------GGGGCUa---CACgCCGU-CG- -5'
29624 3' -58.4 NC_006151.1 + 60852 0.78 0.212071
Target:  5'- aUCGUGGCGUCCaugaCGAggacccGCGGCAGCc -3'
miRNA:   3'- -GGUACCGCAGGg---GCUaca---CGCCGUCG- -5'
29624 3' -58.4 NC_006151.1 + 81416 0.78 0.212071
Target:  5'- -gGUGGCGUCCCCGccgagGUcGCGGCgcAGCg -3'
miRNA:   3'- ggUACCGCAGGGGCua---CA-CGCCG--UCG- -5'
29624 3' -58.4 NC_006151.1 + 54621 0.78 0.233427
Target:  5'- gCcgGGCGcgCCCCGggGggaaGCGGCGGCg -3'
miRNA:   3'- gGuaCCGCa-GGGGCuaCa---CGCCGUCG- -5'
29624 3' -58.4 NC_006151.1 + 23698 0.77 0.244767
Target:  5'- gCAUGGCGUCCCCGG-----GGCAGCc -3'
miRNA:   3'- gGUACCGCAGGGGCUacacgCCGUCG- -5'
29624 3' -58.4 NC_006151.1 + 58407 0.75 0.315429
Target:  5'- gCCAUGGCGcgCagCUGGgcGUGCGGCAGCc -3'
miRNA:   3'- -GGUACCGCa-Gg-GGCUa-CACGCCGUCG- -5'
29624 3' -58.4 NC_006151.1 + 2219 0.74 0.360039
Target:  5'- uCCAcGGCGcCCCCG----GCGGCGGCg -3'
miRNA:   3'- -GGUaCCGCaGGGGCuacaCGCCGUCG- -5'
29624 3' -58.4 NC_006151.1 + 20300 0.74 0.367889
Target:  5'- cCCcgGGCGcCCgCCG-UGgcguugGCGGCGGCg -3'
miRNA:   3'- -GGuaCCGCaGG-GGCuACa-----CGCCGUCG- -5'
29624 3' -58.4 NC_006151.1 + 75334 0.73 0.408868
Target:  5'- cCCAUGGCGUgCUCGAagGUcacGUGGCAGg -3'
miRNA:   3'- -GGUACCGCAgGGGCUa-CA---CGCCGUCg -5'
29624 3' -58.4 NC_006151.1 + 28589 0.73 0.426038
Target:  5'- gCCGgcGCGUCCCCGGaG-GCGGguGCc -3'
miRNA:   3'- -GGUacCGCAGGGGCUaCaCGCCguCG- -5'
29624 3' -58.4 NC_006151.1 + 28870 0.73 0.426038
Target:  5'- gCCGgcGCGUCCCCGGaG-GCGGguGCc -3'
miRNA:   3'- -GGUacCGCAGGGGCUaCaCGCCguCG- -5'
29624 3' -58.4 NC_006151.1 + 91846 0.73 0.434783
Target:  5'- ---cGGCG-CCUCGGUGUGCGaGCGGa -3'
miRNA:   3'- gguaCCGCaGGGGCUACACGC-CGUCg -5'
29624 3' -58.4 NC_006151.1 + 71966 0.72 0.452578
Target:  5'- ---cGGCGUUgUCGcgGUGCGGCGGg -3'
miRNA:   3'- gguaCCGCAGgGGCuaCACGCCGUCg -5'
29624 3' -58.4 NC_006151.1 + 3621 0.72 0.461623
Target:  5'- gCCGUGGcCGUCCCCGcgGaG-GGCcGCg -3'
miRNA:   3'- -GGUACC-GCAGGGGCuaCaCgCCGuCG- -5'
29624 3' -58.4 NC_006151.1 + 69041 0.72 0.470763
Target:  5'- gCgGUGGCGUCaaagaCCGGca-GCGGCGGCu -3'
miRNA:   3'- -GgUACCGCAGg----GGCUacaCGCCGUCG- -5'
29624 3' -58.4 NC_006151.1 + 141159 0.72 0.479994
Target:  5'- aCCAUcgGGCgGUCUUCGggGUaGCGGCAGUc -3'
miRNA:   3'- -GGUA--CCG-CAGGGGCuaCA-CGCCGUCG- -5'
29624 3' -58.4 NC_006151.1 + 67752 0.72 0.489312
Target:  5'- ---cGGCGgCCCCGucgggGUGCGGCGucGCg -3'
miRNA:   3'- gguaCCGCaGGGGCua---CACGCCGU--CG- -5'
29624 3' -58.4 NC_006151.1 + 36000 0.71 0.508196
Target:  5'- gCAUcGCGUccggCCCCGAcG-GCGGCAGCc -3'
miRNA:   3'- gGUAcCGCA----GGGGCUaCaCGCCGUCG- -5'
29624 3' -58.4 NC_006151.1 + 128028 0.71 0.508196
Target:  5'- ---cGGCGUCUgCGAcGcccGCGGCAGCg -3'
miRNA:   3'- gguaCCGCAGGgGCUaCa--CGCCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.