miRNA display CGI


Results 1 - 20 of 104 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29624 3' -58.4 NC_006151.1 + 2219 0.74 0.360039
Target:  5'- uCCAcGGCGcCCCCG----GCGGCGGCg -3'
miRNA:   3'- -GGUaCCGCaGGGGCuacaCGCCGUCG- -5'
29624 3' -58.4 NC_006151.1 + 2689 0.67 0.763621
Target:  5'- ---cGGCucggCCCCGggGUGCaGGCGGg -3'
miRNA:   3'- gguaCCGca--GGGGCuaCACG-CCGUCg -5'
29624 3' -58.4 NC_006151.1 + 3621 0.72 0.461623
Target:  5'- gCCGUGGcCGUCCCCGcgGaG-GGCcGCg -3'
miRNA:   3'- -GGUACC-GCAGGGGCuaCaCgCCGuCG- -5'
29624 3' -58.4 NC_006151.1 + 3678 0.69 0.646438
Target:  5'- cCCggGGCGgcgggCCCCGg---GCGcGCGGCg -3'
miRNA:   3'- -GGuaCCGCa----GGGGCuacaCGC-CGUCG- -5'
29624 3' -58.4 NC_006151.1 + 4500 0.67 0.735256
Target:  5'- gCCAcGGCGcUCaCCGc-GUGCGGCAGg -3'
miRNA:   3'- -GGUaCCGC-AGgGGCuaCACGCCGUCg -5'
29624 3' -58.4 NC_006151.1 + 4548 1.13 0.000888
Target:  5'- gCCAUGGCGUCCCCGAUGUGCGGCAGCg -3'
miRNA:   3'- -GGUACCGCAGGGGCUACACGCCGUCG- -5'
29624 3' -58.4 NC_006151.1 + 4912 0.71 0.556641
Target:  5'- gCCAgGGC-UCCCCGAgcgGgGUGaGCAGCg -3'
miRNA:   3'- -GGUaCCGcAGGGGCUa--CaCGC-CGUCG- -5'
29624 3' -58.4 NC_006151.1 + 7514 0.66 0.799831
Target:  5'- -uGUGGUgGUCUCUGuguUGUGUGGUGGUa -3'
miRNA:   3'- ggUACCG-CAGGGGCu--ACACGCCGUCG- -5'
29624 3' -58.4 NC_006151.1 + 9042 0.66 0.80854
Target:  5'- gCCggGGCG-CCCCGc-GUGCuccGGgGGCg -3'
miRNA:   3'- -GGuaCCGCaGGGGCuaCACG---CCgUCG- -5'
29624 3' -58.4 NC_006151.1 + 10642 0.66 0.817095
Target:  5'- gCCGgcgcGGCaUCCCCGcccagGCGGCGGg -3'
miRNA:   3'- -GGUa---CCGcAGGGGCuaca-CGCCGUCg -5'
29624 3' -58.4 NC_006151.1 + 13970 0.66 0.814545
Target:  5'- gCCAUGggggagccgggcccGCGUCCCCGGggcccacgUGUGaGGCcccGGCc -3'
miRNA:   3'- -GGUAC--------------CGCAGGGGCU--------ACACgCCG---UCG- -5'
29624 3' -58.4 NC_006151.1 + 15082 0.69 0.646438
Target:  5'- cCCcUGGCG-CCCCGAcacGCGGC-GCc -3'
miRNA:   3'- -GGuACCGCaGGGGCUacaCGCCGuCG- -5'
29624 3' -58.4 NC_006151.1 + 17372 0.67 0.762691
Target:  5'- gCCGUGGgGUCggaccgugUCCGcacgacggggcgcGUGgcgcGCGGCAGCa -3'
miRNA:   3'- -GGUACCgCAG--------GGGC-------------UACa---CGCCGUCG- -5'
29624 3' -58.4 NC_006151.1 + 18523 0.69 0.66646
Target:  5'- gCAUGcGCGUCCCCGccc-GCGuCGGCa -3'
miRNA:   3'- gGUAC-CGCAGGGGCuacaCGCcGUCG- -5'
29624 3' -58.4 NC_006151.1 + 19938 0.67 0.763621
Target:  5'- gCAUGGUcucaaCCCCGGUGUGUcgagacucgcggGGguGCc -3'
miRNA:   3'- gGUACCGca---GGGGCUACACG------------CCguCG- -5'
29624 3' -58.4 NC_006151.1 + 20300 0.74 0.367889
Target:  5'- cCCcgGGCGcCCgCCG-UGgcguugGCGGCGGCg -3'
miRNA:   3'- -GGuaCCGCaGG-GGCuACa-----CGCCGUCG- -5'
29624 3' -58.4 NC_006151.1 + 21594 0.67 0.744809
Target:  5'- uCgAUGGCGUa--CGgcGUgGCGGCGGCg -3'
miRNA:   3'- -GgUACCGCAgggGCuaCA-CGCCGUCG- -5'
29624 3' -58.4 NC_006151.1 + 23698 0.77 0.244767
Target:  5'- gCAUGGCGUCCCCGG-----GGCAGCc -3'
miRNA:   3'- gGUACCGCAGGGGCUacacgCCGUCG- -5'
29624 3' -58.4 NC_006151.1 + 28092 0.71 0.54683
Target:  5'- gUCcgGGCGUCCUCGAgcgGgGcGCGGCu -3'
miRNA:   3'- -GGuaCCGCAGGGGCUacaCgC-CGUCG- -5'
29624 3' -58.4 NC_006151.1 + 28589 0.73 0.426038
Target:  5'- gCCGgcGCGUCCCCGGaG-GCGGguGCc -3'
miRNA:   3'- -GGUacCGCAGGGGCUaCaCGCCguCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.