miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29624 5' -57.6 NC_006151.1 + 99124 0.66 0.837992
Target:  5'- gGCGCUGCUGGaccccGGGGcgcaGGCCGUGc -3'
miRNA:   3'- -UGCGACGGCCacuacUUCC----UCGGCAC- -5'
29624 5' -57.6 NC_006151.1 + 77912 0.66 0.837992
Target:  5'- gACGCgGCCcacggccguGGUGGUGAAGG-GCgGg- -3'
miRNA:   3'- -UGCGaCGG---------CCACUACUUCCuCGgCac -5'
29624 5' -57.6 NC_006151.1 + 42858 0.66 0.837992
Target:  5'- cCGCUGCaCGacgaUGGUcGAGGGGGCCGc- -3'
miRNA:   3'- uGCGACG-GCc---ACUA-CUUCCUCGGCac -5'
29624 5' -57.6 NC_006151.1 + 133502 0.67 0.794866
Target:  5'- -gGCgGCgCGGggggcGcgGGAGGAGCCGUa -3'
miRNA:   3'- ugCGaCG-GCCa----CuaCUUCCUCGGCAc -5'
29624 5' -57.6 NC_006151.1 + 59128 0.67 0.785768
Target:  5'- -aGCUGCCGGUGGgUGGcgcccgcgggcGGGuccaGGCCGg- -3'
miRNA:   3'- ugCGACGGCCACU-ACU-----------UCC----UCGGCac -5'
29624 5' -57.6 NC_006151.1 + 127264 0.67 0.777462
Target:  5'- cGCGCggugGCCGGUGAggucgaugacgggucGggGGuGCUGg- -3'
miRNA:   3'- -UGCGa---CGGCCACUa--------------CuuCCuCGGCac -5'
29624 5' -57.6 NC_006151.1 + 88813 0.67 0.776532
Target:  5'- aGCGC-GuCCGGUGGgcGAGGGAGgCGUu -3'
miRNA:   3'- -UGCGaC-GGCCACUa-CUUCCUCgGCAc -5'
29624 5' -57.6 NC_006151.1 + 30629 0.67 0.776532
Target:  5'- cGCGCUGUgCGGgugGGUGggGGAggggguugaugGCCGc- -3'
miRNA:   3'- -UGCGACG-GCCa--CUACuuCCU-----------CGGCac -5'
29624 5' -57.6 NC_006151.1 + 10466 0.67 0.776532
Target:  5'- gACGCgGCggCGGUGAagGAGGaGAGCCGc- -3'
miRNA:   3'- -UGCGaCG--GCCACUa-CUUC-CUCGGCac -5'
29624 5' -57.6 NC_006151.1 + 126045 0.67 0.775602
Target:  5'- gGCGCcGCCgucggcaaGGUGGuccUGGgugccacGGGGGCCGUGa -3'
miRNA:   3'- -UGCGaCGG--------CCACU---ACU-------UCCUCGGCAC- -5'
29624 5' -57.6 NC_006151.1 + 21389 0.67 0.748089
Target:  5'- cACGacgGCCGGcggGgcGAAGGGGCgGUGc -3'
miRNA:   3'- -UGCga-CGGCCa--CuaCUUCCUCGgCAC- -5'
29624 5' -57.6 NC_006151.1 + 122212 0.68 0.718733
Target:  5'- gGCGCagccgUGCgCGGUG-UGcuucGAGGAGCUGUGc -3'
miRNA:   3'- -UGCG-----ACG-GCCACuAC----UUCCUCGGCAC- -5'
29624 5' -57.6 NC_006151.1 + 1966 0.68 0.718733
Target:  5'- -aGgaGCCGGUGG---AGGGGCCGg- -3'
miRNA:   3'- ugCgaCGGCCACUacuUCCUCGGCac -5'
29624 5' -57.6 NC_006151.1 + 128331 0.68 0.68871
Target:  5'- cACGUaGCCGGccagcgucagguUGAUGAGGGucuGCgCGUGg -3'
miRNA:   3'- -UGCGaCGGCC------------ACUACUUCCu--CG-GCAC- -5'
29624 5' -57.6 NC_006151.1 + 99236 0.68 0.68871
Target:  5'- cCGCUGCaGGUcGUGGAGGcGCuCGUGa -3'
miRNA:   3'- uGCGACGgCCAcUACUUCCuCG-GCAC- -5'
29624 5' -57.6 NC_006151.1 + 3727 0.69 0.668446
Target:  5'- gGCGCUggguccggGCCGGcGgcGggGGAGCUGg- -3'
miRNA:   3'- -UGCGA--------CGGCCaCuaCuuCCUCGGCac -5'
29624 5' -57.6 NC_006151.1 + 134113 0.69 0.648065
Target:  5'- -gGCUGCUGGUGugccgGAGuccGGGGCCGg- -3'
miRNA:   3'- ugCGACGGCCACua---CUU---CCUCGGCac -5'
29624 5' -57.6 NC_006151.1 + 16583 0.7 0.607214
Target:  5'- -aGUUGuuGGUGggGggGGAGuCCGg- -3'
miRNA:   3'- ugCGACggCCACuaCuuCCUC-GGCac -5'
29624 5' -57.6 NC_006151.1 + 28533 0.7 0.597029
Target:  5'- gGCGUccggGaCCGGccaAUGggGGAGCCGUGc -3'
miRNA:   3'- -UGCGa---C-GGCCac-UACuuCCUCGGCAC- -5'
29624 5' -57.6 NC_006151.1 + 103973 0.71 0.566655
Target:  5'- aGCGC-GUCGGcGAgcUGGAGGcGGCCGUGg -3'
miRNA:   3'- -UGCGaCGGCCaCU--ACUUCC-UCGGCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.