miRNA display CGI


Results 1 - 20 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29625 5' -58.1 NC_006151.1 + 5206 1.08 0.002163
Target:  5'- gGACGAGGAGGACGAGGACGAGGAGGAg -3'
miRNA:   3'- -CUGCUCCUCCUGCUCCUGCUCCUCCU- -5'
29625 5' -58.1 NC_006151.1 + 5176 0.99 0.009938
Target:  5'- --gGAGGAGGACGAGGACGAGGAGGAc -3'
miRNA:   3'- cugCUCCUCCUGCUCCUGCUCCUCCU- -5'
29625 5' -58.1 NC_006151.1 + 15784 0.96 0.01414
Target:  5'- gGACGAGGAGGACGAGGAaGGGGAGGAc -3'
miRNA:   3'- -CUGCUCCUCCUGCUCCUgCUCCUCCU- -5'
29625 5' -58.1 NC_006151.1 + 15466 0.96 0.014928
Target:  5'- cGACGGGGAGGACGAGGACGAaGAGGAa -3'
miRNA:   3'- -CUGCUCCUCCUGCUCCUGCUcCUCCU- -5'
29625 5' -58.1 NC_006151.1 + 15493 0.94 0.020103
Target:  5'- aGACGGGGAGGAggaagaCGAGGACGAGGAGGGg -3'
miRNA:   3'- -CUGCUCCUCCU------GCUCCUGCUCCUCCU- -5'
29625 5' -58.1 NC_006151.1 + 15584 0.92 0.027047
Target:  5'- uACGAGGAGGACGAcgaggccgaGGACGAGGAGGAc -3'
miRNA:   3'- cUGCUCCUCCUGCU---------CCUGCUCCUCCU- -5'
29625 5' -58.1 NC_006151.1 + 30974 0.92 0.027047
Target:  5'- gGGCGGGGgacgGGGACGGGGACGGGGAGGAg -3'
miRNA:   3'- -CUGCUCC----UCCUGCUCCUGCUCCUCCU- -5'
29625 5' -58.1 NC_006151.1 + 110043 0.9 0.039385
Target:  5'- cGAgGAGGGGGACGAGGACGGGGAcgaGGAc -3'
miRNA:   3'- -CUgCUCCUCCUGCUCCUGCUCCU---CCU- -5'
29625 5' -58.1 NC_006151.1 + 1879 0.89 0.042673
Target:  5'- gGAgGAGGAGGACGGGGACGGGGAcgaGGAc -3'
miRNA:   3'- -CUgCUCCUCCUGCUCCUGCUCCU---CCU- -5'
29625 5' -58.1 NC_006151.1 + 15538 0.87 0.065265
Target:  5'- aGACGAGGAGGAagaggaaGGGGACGAGGAcGGGg -3'
miRNA:   3'- -CUGCUCCUCCUg------CUCCUGCUCCU-CCU- -5'
29625 5' -58.1 NC_006151.1 + 33155 0.86 0.076425
Target:  5'- uGCGAGGcGGGuCGGGGGCGGGGAGGAa -3'
miRNA:   3'- cUGCUCC-UCCuGCUCCUGCUCCUCCU- -5'
29625 5' -58.1 NC_006151.1 + 66825 0.85 0.080535
Target:  5'- cGACGAGGAGGAUGGGGGgGAaGAGGAg -3'
miRNA:   3'- -CUGCUCCUCCUGCUCCUgCUcCUCCU- -5'
29625 5' -58.1 NC_006151.1 + 1912 0.83 0.109974
Target:  5'- gGACGAGGAccGGGcCGAGGGCGAGGGGaGAg -3'
miRNA:   3'- -CUGCUCCU--CCU-GCUCCUGCUCCUC-CU- -5'
29625 5' -58.1 NC_006151.1 + 10443 0.83 0.118779
Target:  5'- cGGCGGGGAGG--GAGGAgGAGGAGGAc -3'
miRNA:   3'- -CUGCUCCUCCugCUCCUgCUCCUCCU- -5'
29625 5' -58.1 NC_006151.1 + 27957 0.83 0.118779
Target:  5'- -gUGGGGAGGGaggGGGGACGGGGAGGAg -3'
miRNA:   3'- cuGCUCCUCCUg--CUCCUGCUCCUCCU- -5'
29625 5' -58.1 NC_006151.1 + 71551 0.82 0.138386
Target:  5'- uGCGAgGGAGGG-GGGGGCGAGGGGGAc -3'
miRNA:   3'- cUGCU-CCUCCUgCUCCUGCUCCUCCU- -5'
29625 5' -58.1 NC_006151.1 + 93430 0.81 0.15695
Target:  5'- --aGAGGAGGAgGGGGGCGAGcGGGGGu -3'
miRNA:   3'- cugCUCCUCCUgCUCCUGCUC-CUCCU- -5'
29625 5' -58.1 NC_006151.1 + 15742 0.81 0.162538
Target:  5'- aGACGAGGAcgaagaugaagacgaGGACGAGGACGAuGGAGa- -3'
miRNA:   3'- -CUGCUCCU---------------CCUGCUCCUGCU-CCUCcu -5'
29625 5' -58.1 NC_006151.1 + 27532 0.8 0.164987
Target:  5'- cGugGGGGGGGGgGGGGGgGGGGGGGGg -3'
miRNA:   3'- -CugCUCCUCCUgCUCCUgCUCCUCCU- -5'
29625 5' -58.1 NC_006151.1 + 15617 0.8 0.181729
Target:  5'- nACGAGGAGGACGGGGACGAcuuugacGGGGc- -3'
miRNA:   3'- cUGCUCCUCCUGCUCCUGCU-------CCUCcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.