miRNA display CGI


Results 1 - 20 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29625 5' -58.1 NC_006151.1 + 1611 0.69 0.673602
Target:  5'- cGAUGggagaAGGAGGAgaaGGGGACcgggggaccgcggGAGGAGGAg -3'
miRNA:   3'- -CUGC-----UCCUCCUg--CUCCUG-------------CUCCUCCU- -5'
29625 5' -58.1 NC_006151.1 + 1787 0.73 0.433012
Target:  5'- aGAgGAGGAGGGCcaccGGGcCGGGGAGGc -3'
miRNA:   3'- -CUgCUCCUCCUGc---UCCuGCUCCUCCu -5'
29625 5' -58.1 NC_006151.1 + 1879 0.89 0.042673
Target:  5'- gGAgGAGGAGGACGGGGACGGGGAcgaGGAc -3'
miRNA:   3'- -CUgCUCCUCCUGCUCCUGCUCCU---CCU- -5'
29625 5' -58.1 NC_006151.1 + 1912 0.83 0.109974
Target:  5'- gGACGAGGAccGGGcCGAGGGCGAGGGGaGAg -3'
miRNA:   3'- -CUGCUCCU--CCU-GCUCCUGCUCCUC-CU- -5'
29625 5' -58.1 NC_006151.1 + 3509 0.78 0.226719
Target:  5'- ----cGGAGGAgGAGGAgGAGGAGGAc -3'
miRNA:   3'- cugcuCCUCCUgCUCCUgCUCCUCCU- -5'
29625 5' -58.1 NC_006151.1 + 3833 0.66 0.824047
Target:  5'- uGGCGGggcuGGAGGGCccGGAgcCGGGGAGGc -3'
miRNA:   3'- -CUGCU----CCUCCUGcuCCU--GCUCCUCCu -5'
29625 5' -58.1 NC_006151.1 + 5040 0.73 0.441845
Target:  5'- -cCGGGGAGGccGCGGcGGAgGAGGAGGc -3'
miRNA:   3'- cuGCUCCUCC--UGCU-CCUgCUCCUCCu -5'
29625 5' -58.1 NC_006151.1 + 5176 0.99 0.009938
Target:  5'- --gGAGGAGGACGAGGACGAGGAGGAc -3'
miRNA:   3'- cugCUCCUCCUGCUCCUGCUCCUCCU- -5'
29625 5' -58.1 NC_006151.1 + 5206 1.08 0.002163
Target:  5'- gGACGAGGAGGACGAGGACGAGGAGGAg -3'
miRNA:   3'- -CUGCUCCUCCUGCUCCUGCUCCUCCU- -5'
29625 5' -58.1 NC_006151.1 + 5253 0.71 0.544941
Target:  5'- cGGCGGGGgcccggGGGGCgGAGGGCGAGcgggccGGGGAg -3'
miRNA:   3'- -CUGCUCC------UCCUG-CUCCUGCUC------CUCCU- -5'
29625 5' -58.1 NC_006151.1 + 5833 0.74 0.374202
Target:  5'- gGAgGAGGAGGcCGGGGAggcugcgGAGGGGGAc -3'
miRNA:   3'- -CUgCUCCUCCuGCUCCUg------CUCCUCCU- -5'
29625 5' -58.1 NC_006151.1 + 8090 0.72 0.478158
Target:  5'- uGGCGGGGcGuGGCaGAGGGgGAGGGGGGg -3'
miRNA:   3'- -CUGCUCCuC-CUG-CUCCUgCUCCUCCU- -5'
29625 5' -58.1 NC_006151.1 + 8213 0.7 0.584453
Target:  5'- aGACGAaGAGGGCcGGGuccccuucccgGCGGGGAGGGc -3'
miRNA:   3'- -CUGCUcCUCCUGcUCC-----------UGCUCCUCCU- -5'
29625 5' -58.1 NC_006151.1 + 8384 0.73 0.433012
Target:  5'- -cCGGGGGGGuCcGGGAUGGGGGGGGu -3'
miRNA:   3'- cuGCUCCUCCuGcUCCUGCUCCUCCU- -5'
29625 5' -58.1 NC_006151.1 + 8471 0.72 0.468022
Target:  5'- --gGAGGAcggauggucggucGGACGGGGcggGCGGGGAGGGu -3'
miRNA:   3'- cugCUCCU-------------CCUGCUCC---UGCUCCUCCU- -5'
29625 5' -58.1 NC_006151.1 + 9518 0.78 0.232201
Target:  5'- -gUGGGGaAGGAagaGGGGACGGGGGGGAa -3'
miRNA:   3'- cuGCUCC-UCCUg--CUCCUGCUCCUCCU- -5'
29625 5' -58.1 NC_006151.1 + 9610 0.73 0.441845
Target:  5'- aACGGGGAagGGGCcGGcGGCGAGGGGGGa -3'
miRNA:   3'- cUGCUCCU--CCUGcUC-CUGCUCCUCCU- -5'
29625 5' -58.1 NC_006151.1 + 9728 0.71 0.571534
Target:  5'- --gGAGGAGaGGgGAGGaaaaaaagucuagaGCGGGGAGGAg -3'
miRNA:   3'- cugCUCCUC-CUgCUCC--------------UGCUCCUCCU- -5'
29625 5' -58.1 NC_006151.1 + 9968 0.66 0.832306
Target:  5'- aGGCgGAGGAGGAgaaGaAGGA-GAGGaAGGAa -3'
miRNA:   3'- -CUG-CUCCUCCUg--C-UCCUgCUCC-UCCU- -5'
29625 5' -58.1 NC_006151.1 + 10086 0.69 0.6546
Target:  5'- aGGCGGgcGGAGGaagGCGGGuGCgGAGGAGGAa -3'
miRNA:   3'- -CUGCU--CCUCC---UGCUCcUG-CUCCUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.