Results 21 - 40 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29627 | 3' | -54.8 | NC_006151.1 | + | 68901 | 0.7 | 0.798673 |
Target: 5'- -gGACGGCCUCGCggUCGCGCg---- -3' miRNA: 3'- ggUUGUCGGAGUGagAGCGCGagagg -5' |
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29627 | 3' | -54.8 | NC_006151.1 | + | 104981 | 0.69 | 0.806729 |
Target: 5'- gCCGcCGGCCUCGCUCaacaUCGaccgggcCGC-CUCCg -3' miRNA: 3'- -GGUuGUCGGAGUGAG----AGC-------GCGaGAGG- -5' |
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29627 | 3' | -54.8 | NC_006151.1 | + | 135916 | 0.69 | 0.807617 |
Target: 5'- cCCGGCGGUCgUGCg--CGCGCUCUgCCg -3' miRNA: 3'- -GGUUGUCGGaGUGagaGCGCGAGA-GG- -5' |
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29627 | 3' | -54.8 | NC_006151.1 | + | 39162 | 0.69 | 0.816399 |
Target: 5'- gCGGCGGCCUCucggcGCUgCUCGcCGC-CUUCg -3' miRNA: 3'- gGUUGUCGGAG-----UGA-GAGC-GCGaGAGG- -5' |
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29627 | 3' | -54.8 | NC_006151.1 | + | 59502 | 0.69 | 0.816399 |
Target: 5'- cCCGGCGGCCUcCGCgacgCGCGCgcagCgCCg -3' miRNA: 3'- -GGUUGUCGGA-GUGaga-GCGCGa---GaGG- -5' |
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29627 | 3' | -54.8 | NC_006151.1 | + | 87543 | 0.69 | 0.825013 |
Target: 5'- cCCAGCcgcccguccaGGCCUCGgUCUCG-GCcccggcggacgUCUCCg -3' miRNA: 3'- -GGUUG----------UCGGAGUgAGAGCgCG-----------AGAGG- -5' |
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29627 | 3' | -54.8 | NC_006151.1 | + | 35851 | 0.69 | 0.833449 |
Target: 5'- uCC-GCcGCC-CGCUCUcCGCGCUCggcgCCc -3' miRNA: 3'- -GGuUGuCGGaGUGAGA-GCGCGAGa---GG- -5' |
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29627 | 3' | -54.8 | NC_006151.1 | + | 31588 | 0.69 | 0.841701 |
Target: 5'- -gGGCGGCg-CGCUC-CGCGCUCcCCc -3' miRNA: 3'- ggUUGUCGgaGUGAGaGCGCGAGaGG- -5' |
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29627 | 3' | -54.8 | NC_006151.1 | + | 113815 | 0.68 | 0.84976 |
Target: 5'- gCC-ACGGCCUCGCgCUCGU-CUC-CCu -3' miRNA: 3'- -GGuUGUCGGAGUGaGAGCGcGAGaGG- -5' |
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29627 | 3' | -54.8 | NC_006151.1 | + | 139222 | 0.68 | 0.857621 |
Target: 5'- gCGACGcuGCCgCACaUCgCGCGCgUCUCCg -3' miRNA: 3'- gGUUGU--CGGaGUG-AGaGCGCG-AGAGG- -5' |
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29627 | 3' | -54.8 | NC_006151.1 | + | 38409 | 0.68 | 0.857621 |
Target: 5'- cCCucCGGCCUCcccgGCUC-CGgGCcCUCCa -3' miRNA: 3'- -GGuuGUCGGAG----UGAGaGCgCGaGAGG- -5' |
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29627 | 3' | -54.8 | NC_006151.1 | + | 12797 | 0.68 | 0.857621 |
Target: 5'- cCCGGCGcGCC-CGCUCccucCGCGUccccUCUCCc -3' miRNA: 3'- -GGUUGU-CGGaGUGAGa---GCGCG----AGAGG- -5' |
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29627 | 3' | -54.8 | NC_006151.1 | + | 29896 | 0.68 | 0.857621 |
Target: 5'- gCCAACcuUCUCcCgCUCGCGCUCcCCg -3' miRNA: 3'- -GGUUGucGGAGuGaGAGCGCGAGaGG- -5' |
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29627 | 3' | -54.8 | NC_006151.1 | + | 137761 | 0.68 | 0.857621 |
Target: 5'- uCC-GCGGCCUgGCg--CGCGUgCUCCa -3' miRNA: 3'- -GGuUGUCGGAgUGagaGCGCGaGAGG- -5' |
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29627 | 3' | -54.8 | NC_006151.1 | + | 31137 | 0.68 | 0.865275 |
Target: 5'- -aAAUAGCUUUuaGCUCg-GCGCUCUCUc -3' miRNA: 3'- ggUUGUCGGAG--UGAGagCGCGAGAGG- -5' |
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29627 | 3' | -54.8 | NC_006151.1 | + | 86566 | 0.68 | 0.865275 |
Target: 5'- uCCGGCAGCuCUCgGCgCggGCGCgCUCCg -3' miRNA: 3'- -GGUUGUCG-GAG-UGaGagCGCGaGAGG- -5' |
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29627 | 3' | -54.8 | NC_006151.1 | + | 50442 | 0.68 | 0.872717 |
Target: 5'- gCCGGCGGCCUgggCACcgcccgCggGCGCUCgcgCCa -3' miRNA: 3'- -GGUUGUCGGA---GUGa-----GagCGCGAGa--GG- -5' |
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29627 | 3' | -54.8 | NC_006151.1 | + | 88355 | 0.68 | 0.879942 |
Target: 5'- aCCAcACGGCCUCGCagcgcaggCUCGgCGCgagcgCgUCCg -3' miRNA: 3'- -GGU-UGUCGGAGUGa-------GAGC-GCGa----G-AGG- -5' |
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29627 | 3' | -54.8 | NC_006151.1 | + | 125473 | 0.68 | 0.879942 |
Target: 5'- gCC-ACGGCCgCGCUCggccaGCGCgUCUCg -3' miRNA: 3'- -GGuUGUCGGaGUGAGag---CGCG-AGAGg -5' |
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29627 | 3' | -54.8 | NC_006151.1 | + | 106129 | 0.68 | 0.88417 |
Target: 5'- --cGCGGCCgugcuggccacgaCGCUCUCGCGCacCUUCg -3' miRNA: 3'- gguUGUCGGa------------GUGAGAGCGCGa-GAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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