miRNA display CGI


Results 21 - 40 of 73 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29627 3' -54.8 NC_006151.1 + 38409 0.68 0.857621
Target:  5'- cCCucCGGCCUCcccgGCUC-CGgGCcCUCCa -3'
miRNA:   3'- -GGuuGUCGGAG----UGAGaGCgCGaGAGG- -5'
29627 3' -54.8 NC_006151.1 + 39162 0.69 0.816399
Target:  5'- gCGGCGGCCUCucggcGCUgCUCGcCGC-CUUCg -3'
miRNA:   3'- gGUUGUCGGAG-----UGA-GAGC-GCGaGAGG- -5'
29627 3' -54.8 NC_006151.1 + 39479 0.66 0.939401
Target:  5'- cCCGGguGCCgcgaGCUC-CGCGCgg-CCg -3'
miRNA:   3'- -GGUUguCGGag--UGAGaGCGCGagaGG- -5'
29627 3' -54.8 NC_006151.1 + 47200 0.67 0.918478
Target:  5'- -aGGgAGUCUgGCUCUCGgGgCUCUCg -3'
miRNA:   3'- ggUUgUCGGAgUGAGAGCgC-GAGAGg -5'
29627 3' -54.8 NC_006151.1 + 50442 0.68 0.872717
Target:  5'- gCCGGCGGCCUgggCACcgcccgCggGCGCUCgcgCCa -3'
miRNA:   3'- -GGUUGUCGGA---GUGa-----GagCGCGAGa--GG- -5'
29627 3' -54.8 NC_006151.1 + 51073 0.73 0.630848
Target:  5'- gCGGCGGCCUCcuccGCUCgccCGCccCUCUCCg -3'
miRNA:   3'- gGUUGUCGGAG----UGAGa--GCGc-GAGAGG- -5'
29627 3' -54.8 NC_006151.1 + 55570 0.73 0.589804
Target:  5'- gCCAACAGCUUC-CagUCGCGCUaCgugCCg -3'
miRNA:   3'- -GGUUGUCGGAGuGagAGCGCGA-Ga--GG- -5'
29627 3' -54.8 NC_006151.1 + 55714 0.77 0.390693
Target:  5'- uCCAACAGCuccauCUCGCUCauccUCGCGCcguacuucuUCUCCa -3'
miRNA:   3'- -GGUUGUCG-----GAGUGAG----AGCGCG---------AGAGG- -5'
29627 3' -54.8 NC_006151.1 + 56674 0.66 0.939401
Target:  5'- aCGACGGCgC-CGCg--CGCGCUCaCCg -3'
miRNA:   3'- gGUUGUCG-GaGUGagaGCGCGAGaGG- -5'
29627 3' -54.8 NC_006151.1 + 57481 0.74 0.579602
Target:  5'- gCGGCGGCCUCGCaggCgacgcgcaCGCGCUCggCCg -3'
miRNA:   3'- gGUUGUCGGAGUGa--Ga-------GCGCGAGa-GG- -5'
29627 3' -54.8 NC_006151.1 + 59502 0.69 0.816399
Target:  5'- cCCGGCGGCCUcCGCgacgCGCGCgcagCgCCg -3'
miRNA:   3'- -GGUUGUCGGA-GUGaga-GCGCGa---GaGG- -5'
29627 3' -54.8 NC_006151.1 + 64405 0.72 0.689225
Target:  5'- gCAGCAGCguccacaggucgcuCUCGCUCUgCGCGCgcguggccgcCUCCa -3'
miRNA:   3'- gGUUGUCG--------------GAGUGAGA-GCGCGa---------GAGG- -5'
29627 3' -54.8 NC_006151.1 + 65838 0.66 0.934532
Target:  5'- gCCAgcGCGGCCcggcUCACgccucCUC-CGCUcCUCCa -3'
miRNA:   3'- -GGU--UGUCGG----AGUGa----GAGcGCGA-GAGG- -5'
29627 3' -54.8 NC_006151.1 + 66246 0.7 0.750889
Target:  5'- cUCGACGgugcgcGCCUugaagaCGCUCUCGCGCUgaaaggcCUCCu -3'
miRNA:   3'- -GGUUGU------CGGA------GUGAGAGCGCGA-------GAGG- -5'
29627 3' -54.8 NC_006151.1 + 66517 0.67 0.918478
Target:  5'- uUCGcCGGgCUCGCgcgcgC-CGCGCUCUUCg -3'
miRNA:   3'- -GGUuGUCgGAGUGa----GaGCGCGAGAGG- -5'
29627 3' -54.8 NC_006151.1 + 66724 0.66 0.934532
Target:  5'- gUCAACcGCUUCGCgCUCcugucgcgGCGCUCcuUCCg -3'
miRNA:   3'- -GGUUGuCGGAGUGaGAG--------CGCGAG--AGG- -5'
29627 3' -54.8 NC_006151.1 + 67662 0.67 0.912645
Target:  5'- aCAGCacgcggaagaGGCCcgagUCGCUCgCGCGCagCUCCc -3'
miRNA:   3'- gGUUG----------UCGG----AGUGAGaGCGCGa-GAGG- -5'
29627 3' -54.8 NC_006151.1 + 68901 0.7 0.798673
Target:  5'- -gGACGGCCUCGCggUCGCGCg---- -3'
miRNA:   3'- ggUUGUCGGAGUGagAGCGCGagagg -5'
29627 3' -54.8 NC_006151.1 + 72110 0.66 0.934532
Target:  5'- gCGGCAGCgUCAUggggaaGCGCagCUCCa -3'
miRNA:   3'- gGUUGUCGgAGUGagag--CGCGa-GAGG- -5'
29627 3' -54.8 NC_006151.1 + 80505 0.67 0.891037
Target:  5'- uCCAGCAGCCUUcccccguggaUgGCGCUCcCCg -3'
miRNA:   3'- -GGUUGUCGGAGugag------AgCGCGAGaGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.